Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0348
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                89   2e-18
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 50/106 (47%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
 Frame = +1

Query: 76  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQT 255
           ARP+++V++E  E+       LP VFKAPIRPD VN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 256 VPNH---GVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
                  G     +P  R           QGAFGNMC  G MF PT
Sbjct: 60  SAESWGTGRAVARIPRVRGGGT---HRSGQGAFGNMCRGGRMFAPT 102


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 143  GRGLAAPCTVSLFSEYTDTKGRATDRLI 60
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 373 TYXHXDTCYRRHPEXDQWVPXPXXXGIRATAR 278
           TY H DT   +HP+   +V  P     R   R
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHANARGAPR 354


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 373 TYXHXDTCYRRHPEXDQWVPXP 308
           TY H DT  R+HP+   +V  P
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAP 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,567,336
Number of Sequences: 59808
Number of extensions: 187863
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)