Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0348
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    69   2e-12
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    27   5.0  
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    27   5.0  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   6.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 43/105 (40%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
 Frame = +1

Query: 76  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQ- 252
           ARPLV+VY EK E  Q   + LP VF+ PIRPD V+ +   + +N RQ + V+  AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 253 TVPNHGVPDVL--LPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXP 381
           +  + G    +  +P  R           QGAFGNMC  G MF P
Sbjct: 62  SAESWGTGRAVARIPRVRGGGT---HRSGQGAFGNMCRGGHMFAP 103



 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 20/29 (68%), Positives = 21/29 (72%)
 Frame = +3

Query: 252 NSAXSWGTGRAVARIPXXXGXGTHWSXSG 338
           +SA SWGTGRAVARIP   G GTH S  G
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQG 89


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 124 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 23
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 394 PXAXWGRTYXHXDTCYRRHPEXDQWVPXPXXXGIRATARPVP 269
           P A WGR         R++ E  ++V      G RA   PVP
Sbjct: 338 PPAEWGRKQNEELEQIRKNLEPPKYVEQVKVEGARAPVEPVP 379


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 394 PXAXWGRTYXHXDTCYRRHPEXDQWVPXPXXXGIRATARPVP 269
           P A WGR         R++ E  ++V      G RA   PVP
Sbjct: 338 PPAEWGRKQNEELEQIRKNLEPPKYVEQVKVEGARAPVEPVP 379


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 167 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 54
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 167 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 54
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,650,581
Number of Sequences: 27780
Number of extensions: 135108
Number of successful extensions: 269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)