Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0348
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   5.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   9.1  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 297 EFGQQHVRYPMIXHCLVTSXLAXAVGLPRVL 205
           +FG+ +V+Y      L T  LA AV    VL
Sbjct: 285 QFGENNVQYQGSEDILNTQSLAKAVSKNGVL 315


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +1

Query: 178 VNDVHVSMSKNSRQPYCVSKXAGHQTVPNHGVP 276
           + DV      +    Y  ++ +G   +P HG+P
Sbjct: 417 LTDVFHVQETDKYDAYYGNRFSGEYEIPAHGLP 449


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +1

Query: 217 QPYCVSKXAGHQTVPNHGVPDV 282
           QP  V++       P HG P V
Sbjct: 259 QPVTVNRQLNSDVQPGHGSPPV 280


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = -3

Query: 376 RTYXHXDTCYRRHPEXDQWV 317
           R +   D C R +P   +W+
Sbjct: 712 RLHYETDPCVRYYPRRKEWL 731


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 154 KAPIRPDXVNDVHVSMSKNSRQPY 225
           K P++   + D+ + M    RQP+
Sbjct: 59  KLPVKAITLPDLSIPMQLGRRQPF 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,248
Number of Sequences: 438
Number of extensions: 1727
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)