Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0348
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    81   4e-16
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    79   1e-15
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   1.5  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    27   3.5  
At2g19060.1 68415.m02226 GDSL-motif lipase/hydrolase family prot...    27   4.6  
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain...    27   4.6  
At5g42180.1 68418.m05134 peroxidase 64 (PER64) (P64) (PRXR4) ide...    27   6.1  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    27   6.1  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    27   6.1  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 80.6 bits (190), Expect = 4e-16
 Identities = 47/110 (42%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
 Frame = +1

Query: 61  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVS 234
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 235 KXAGHQTVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
           K AGHQT          +               Q AFGNMC  G MF PT
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPT 110


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 47/107 (43%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
 Frame = +1

Query: 70  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXA 243
           + ARPLV+V     +  T Q     LP V  AP+RPD VN VH  +S NSRQPY VSK A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 244 GHQTVPNHGVPDVLLPEFRXSXVVVPIGPSQGAFGNMCXCGXMFXPT 384
           GHQT          +               Q AFGNMC  G MF PT
Sbjct: 65  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPT 111


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 85  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCV 231
           LV +++  SE+++    PLPF  K+P +PD +   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 136 PLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCV 231
           P+PF  K+P +PD +   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 136 PLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCV 231
           P+PF  K+P +PD +   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At2g19060.1 68415.m02226 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL6 GI:15054390, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 349

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 109 SETVQGAAKPLPFVFKAPIRPDXVNDVHVSMSKNSRQPYCVSKXAGHQTVPNHG--VPDV 282
           +E V+G   P  FVF   +  +  N+   +++K +  PY +    G     ++G  +PD 
Sbjct: 20  AEAVRGQLVPCYFVFGDSVFDNGNNNELDTLAKVNYSPYGIDFARGPTGRFSNGRNIPDF 79

Query: 283 LLPEFRXSXVVVP 321
           +  E R S  + P
Sbjct: 80  IAEELRISYDIPP 92


>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to CLATHRIN
           COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
           SWISSPROT:Q61548
          Length = 599

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 124 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 26
           PAPS ++ N   +   +P+D F    E  PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551


>At5g42180.1 68418.m05134 peroxidase 64 (PER64) (P64) (PRXR4)
           identical to SP|Q43872 Peroxidase 64 precursor (EC
           1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) {Arabidopsis
           thaliana}
          Length = 317

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 75  SPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRF 197
           +PTF++   R+     G S    V + G HT G    CS F
Sbjct: 159 APTFNISQLRQNFGQRGLSMHDLVALSGGHTLGFAH-CSSF 198


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 60  NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGXXQ*CSRF 197
           N +I +PT S+          G S    V + GAHT G  + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 139 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 26
           G W+H   SH+  ++  L VG+ +      Y+S + P +Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,298,416
Number of Sequences: 28952
Number of extensions: 130628
Number of successful extensions: 329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)