Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0347
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 31 0.93
SB_159| Best HMM Match : TP2 (HMM E-Value=0.58) 31 0.93
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 29 2.2
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 3.8
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 27 8.7
>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 474 GNCPALMXFSTTRTHPKAIKQKFRMWKQIKLNHSE 370
G+ P M T +T PK + Q FR +KQ++ H +
Sbjct: 38 GSLPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKK 72
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = -3
Query: 272 WNSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 129
W AR LV A T ++ PAD +L+ SPSR CV T C +G
Sbjct: 745 WGRAR-TLVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 30.7 bits (66), Expect = 0.93
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 281 VGMWNSARGRLVTAATGSMGPADGALLLSPSRKHFLF-ICVEPGSTPRCPSGTPSMSPQK 105
+ + N RGRL T++ G + +S S L + P ++ R P G+ S+SP
Sbjct: 257 IALNNPLRGRLSTSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSPPGSGSLSPSV 316
Query: 104 GSPASQP-YTLNRN*TVAAVS-SRRNSPHTQKRVHR 3
SP+ P + N N + S + +PH++ +R
Sbjct: 317 FSPSPCPIWEENYNTSDDFASHAESKAPHSEINQYR 352
>SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 30.7 bits (66), Expect = 0.93
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 281 VGMWNSARGRLVTAATGSMGPADGALLLSPSRKHFLF-ICVEPGSTPRCPSGTPSMSPQK 105
+ + N RGRL T++ G + +S S L + P ++ R P G+ S+SP
Sbjct: 257 IALNNPLRGRLSTSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSPPGSGSLSPSV 316
Query: 104 GSPASQP-YTLNRN*TVAAVS-SRRNSPHTQKRVHR 3
SP+ P + N N + S + +PH++ +R
Sbjct: 317 FSPSPCPIWEENYNTSDDFASHAESKAPHSEINQYR 352
>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
Length = 333
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -3
Query: 203 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 96
L++P K+F++ CV PG++ R P+ PS++ +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 164 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 78
+ P S P PS +P+ + GSP QP++
Sbjct: 77 LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 269 NSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 96
+S RL+ +TG+ G A + S + KH P S P P PS +G P
Sbjct: 257 DSVSSRLINRSTGNSGTASPTFITSSANKHAQL----PPSAPASPK--PSTPSSEGMP 308
>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 480 YNGNCPALMXFSTTRTHPKAIKQKFRMW-KQIKLNHSE 370
YNG+ P L+ + T P ++F++W Q LN SE
Sbjct: 246 YNGSSPYLVYLNLTTPRPVYTGEEFQVWLNQDLLNDSE 283
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 155 GSTPRCPSGTPSMSPQKGSPASQPYTLNRN*TVAA--VSSRRNSPHTQ 18
G T P G + ++GSP++QP + + T V + R SP TQ
Sbjct: 69 GVTKYTPRGVHQVHIERGSPSTQPEGVTKYTTRGGHQVHNERGSPSTQ 116
>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
Length = 1253
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 146 PRCPSGTPSMSPQKGSPASQPYTLNRN*TVAAVSSRRNSPHTQKRV 9
P G SP +GSP + L R + +RR+ PH Q V
Sbjct: 359 PHLLQGRMEASPLQGSPQVTNHNLARTKGQTSEGNRRHHPHIQAAV 404
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,591,171
Number of Sequences: 59808
Number of extensions: 409839
Number of successful extensions: 1062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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