Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0347
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16460.1 68418.m01924 hypothetical protein similar to unknown...    29   1.8  
At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila...    28   5.4  
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless...    27   7.2  
At5g66130.1 68418.m08331 cell cycle checkpoint protein-related w...    27   9.5  
At4g28840.1 68417.m04122 expressed protein                             27   9.5  
At2g23450.2 68415.m02800 protein kinase family protein contains ...    27   9.5  
At2g23450.1 68415.m02799 protein kinase family protein contains ...    27   9.5  

>At5g16460.1 68418.m01924 hypothetical protein similar to unknown
           protein (pir||T02326)
          Length = 368

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 258 SRTVPHTYPSSVTLNSEPRWLLSTANN 338
           +RT+P  Y + + +NS+P W+   A N
Sbjct: 261 TRTLPQLYEAEIVINSKPPWIKRMAYN 287


>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 547

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 264 TVPHTYPSSVTLNSEPRWLLSTANNSVAEVFKGPMFPSDL 383
           T+P  Y S  TL  + R L+  +N      F G +FP++L
Sbjct: 384 TIPRMYHSIATLLRDGRILVGGSNPHAFYNFTGVLFPTEL 423


>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
           protein, putative similar to notchless [Xenopus laevis]
           GI:3687833; contains Pfam PF00400: WD domain, G-beta
           repeat (8 copies)
          Length = 473

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
 Frame = -3

Query: 281 VGMWNSARGRLVTAATGSMGP-------ADGALLLSPSRKHFLFI 168
           V +WN   G+ VT   G +GP       AD  LLLS S+   L I
Sbjct: 384 VRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKI 428


>At5g66130.1 68418.m08331 cell cycle checkpoint protein-related weak
           similarity to cell cycle checkpoint protein RAD17 [Homo
           sapiens] GI:4102916
          Length = 599

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 472 ELPRIDXVFNHSNASESDQTKVQNVETN*IKSLGNIGPLKTS 347
           ++P +  + +H+NA  SDQT  +  +T    SL   G LK +
Sbjct: 247 QIPTVILITDHNNADSSDQTARRMEDTQ--SSLERAGALKVA 286


>At4g28840.1 68417.m04122 expressed protein
          Length = 146

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 155 GSTPRCPSGTPSMSPQKGSPASQPYTLNRN 66
           G  P  PS +PS S    SP   PY  + N
Sbjct: 84  GGYPSIPSSSPSFSYASSSPPPAPYGFHPN 113


>At2g23450.2 68415.m02800 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 275 MWNSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTP 144
           +W   R  L+T   G++G   GA LL+     F F C    STP
Sbjct: 275 VWRHCRSNLITIVGGTVG---GAFLLAALA--FFFFCKRRRSTP 313


>At2g23450.1 68415.m02799 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 275 MWNSARGRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTP 144
           +W   R  L+T   G++G   GA LL+     F F C    STP
Sbjct: 275 VWRHCRSNLITIVGGTVG---GAFLLAALA--FFFFCKRRRSTP 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,401,288
Number of Sequences: 28952
Number of extensions: 271817
Number of successful extensions: 734
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)