Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0346
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    96   4e-21
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    33   0.024
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    27   2.1  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.1  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   4.8  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   6.3  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.4  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 95.9 bits (228), Expect = 4e-21
 Identities = 47/96 (48%), Positives = 64/96 (66%)
 Frame = +2

Query: 263 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 442
           +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NT
Sbjct: 67  INDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNT 126

Query: 443 GPRSREDLFLPGSFYPXQXFKGTIEIINDVXHLXAR 550
           G    +  F      P +  +GTIEI +DV HL ++
Sbjct: 127 GMEPGKTSFFQALGIPTKITRGTIEITSDV-HLVSK 161



 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
 Frame = +3

Query: 90  SNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTTWT 269
           + YF K+  L ++Y   F+V  DNV SQQM  +R  L G++ ++MGKNTM+R+A++    
Sbjct: 9   AQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIIN 68

Query: 270 TIQPSRNCCHTSRATL----ASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPT 437
            +          R  +     +    E     + N     ++    + PL       P  
Sbjct: 69  DMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPN-AIAPL---DVFVPAG 124

Query: 438 TPGLGPEKTSFFQALSIPTKXSKGLLKSSTMXHIL 542
             G+ P KTSFFQAL IPTK ++G ++ ++  H++
Sbjct: 125 NTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLV 159


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 254 QDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIP 430
           ++H +N   L KLL    G VG +FT     EV     E+ VQ   AR GA+AP + VIP
Sbjct: 83  EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138

Query: 431 A 433
           A
Sbjct: 139 A 139


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 386 PARPGAIAPLSVVIPAHNTGPRSREDLFL 472
           P RPG   P+    P   T P  R  LF+
Sbjct: 137 PTRPGGTIPIPESCPREGTSPYGRTKLFI 165


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 360 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 262
           L +T  +S    + PTLP +   + S +G+LSR
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 171 QQMQQIRISLXGSSIV-LMGKNTMMRKAIKTTWTTIQPSRNCCHTSRATLASCSPAETSL 347
           +Q+Q+   S   S I  L GK ++ +  + +T   IQPS +    +   +A   PA T++
Sbjct: 504 RQIQKAESSEDTSEIESLQGKLSLPQ--VSSTQQEIQPSSSVPEAASNEIAEKEPAVTAI 561

Query: 348 RSVT 359
            S+T
Sbjct: 562 ESIT 565


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -2

Query: 444 PVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSFSRAG 274
           PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  FS   
Sbjct: 142 PVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIFSEEE 198

Query: 273 L 271
           L
Sbjct: 199 L 199


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 227 KKHNDAQSHQDHLDNNPALEKLLPHIKGNV 316
           KK NDA++    L+NNP L    P ++ N+
Sbjct: 288 KKLNDAENRIKELENNPTL-SFNPELEKNL 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,241
Number of Sequences: 5004
Number of extensions: 45104
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)