Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0346
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        115   3e-26
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              30   1.2  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               29   3.8  
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   3.8  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   5.0  
SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      27   8.7  
SB_56030| Best HMM Match : Somatostatin (HMM E-Value=2.1)              27   8.7  
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)                 27   8.7  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  115 bits (276), Expect = 3e-26
 Identities = 58/114 (50%), Positives = 76/114 (66%)
 Frame = +2

Query: 224 GKKHNDAQSHQDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 403
           GK     ++ + HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G 
Sbjct: 38  GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97

Query: 404 IAPLSVVIPAHNTGPRSREDLFLPGSFYPXQXFKGTIEIINDVXHLXAR*QGLE 565
           IAP+ V +PA NTG    +  F      P +  +GTIEIINDV HL  + + L+
Sbjct: 98  IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDV-HLIKKDEKLK 150



 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 61/155 (39%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
 Frame = +3

Query: 114 QLLDEYPKCFIVGADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTTWTTIQPSRNC 293
           Q LDEYPK F+VG DNVGS+QMQ IR SL G   VLMGKNTM+RKAI+            
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 294 CHTSRATLASCSPAE--TSLRSVTNCWRTKSKLQL-VLVPLPHCQSSFPPTTPGLGPEKT 464
               +  +      E    +R +    +  +  +  V+ P+       P    GLGPEKT
Sbjct: 61  LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPI---DVFVPAGNTGLGPEKT 117

Query: 465 SFFQALSIPTKXSKGLLKSSTMXHILXXGDKXWSF 569
           SFFQAL+IPTK ++G ++     H++   +K  +F
Sbjct: 118 SFFQALAIPTKIARGTIEIINDVHLIKKDEKLKAF 152


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 459 SLDRGPVLWAGMTTDNGAMAPGRAGAWTLFSNSL 358
           SLD G   W+  T D     PGRA AW+L+S +L
Sbjct: 587 SLDGGKN-WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 363 CWRTKSKLQLVLVPLPHCQSSFPPTTPGLGPEK-TSFF 473
           C+   SK  +V+  L H Q+S+    PGL PE  T FF
Sbjct: 592 CFTPHSKGCIVVEQLEHLQNSYSCIFPGLNPESVTRFF 629


>SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = +3

Query: 15  LVLKFHRSPYATLSRXGREDKATWXSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRI 194
           +V  F  +P+ T       D A+W   Y+V I  L    P   IV    V + ++++ RI
Sbjct: 168 VVTTFRPAPHVTYCTEFWRD-ASWGVLYWVAIFILQYLVPLIIIVSQAAVIAVKLRKSRI 226

Query: 195 SLXGSSIVLMGKNTMMRKAIKTT 263
            +  SS   + K T +R  IK T
Sbjct: 227 PMLSSSSETLYKKT-LRTRIKQT 248


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
 Frame = +3

Query: 135 KCFIVGADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRAT 314
           +C    +  V S  +QQ  +S+  +       + ++   ++    +I+P+R C HTS   
Sbjct: 51  RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKV 110

Query: 315 LAS-CSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPGLGPEKTS 467
           L++       S+R    C  T SK+    V   + Q       P    + TS
Sbjct: 111 LSTYVQLGVVSIRPARCCQHTSSKVLSAYVQQAYVQQGVVSIRPARYCQHTS 162



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +3

Query: 114 QLLDEYPKCFIVGADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTTWTTIQPSRNC 293
           ++L    +C    +  V S  +QQ  +S+  +       + ++   ++    +I+P+R C
Sbjct: 204 KVLSRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCC 263

Query: 294 CHTSRATLAS-CSPAETSLRSVTNCWRTKSKL 386
            HTS   L++       S+R    C  T SK+
Sbjct: 264 QHTSSKVLSTYVQSGVVSIRPARCCQHTSSKV 295



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 135 KCFIVGADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRAT 314
           +C    +  V S  +QQ  +S+  +       + ++   ++    +I+P+R C HTS   
Sbjct: 320 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 379

Query: 315 L-ASCSPAETSLRSVTNCWRTKSKL 386
           L A       S+R    C  T SK+
Sbjct: 380 LSAYVQQGVVSIRPARCCQHTSSKV 404



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 153 ADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRATL-ASCS 329
           +  V S  +QQ  +S+  +       + ++   ++    +I+P+R C HTS   L A   
Sbjct: 301 SSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQ 360

Query: 330 PAETSLRSVTNCWRTKSKL 386
               S+R    C  T SK+
Sbjct: 361 QGVVSIRPARCCQHTSSKV 379



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 135 KCFIVGADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRAT 314
           +C    +  V S  +QQ  +S+  +       + ++   ++    +I+P+R C HTS   
Sbjct: 345 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 404

Query: 315 L-ASCSPAETSLRSVTNCWRTKSKL 386
           L A       S+R    C  T SK+
Sbjct: 405 LSAYVQQGVVSIRPARCCEHTSSKV 429


>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 221 HGKKHNDAQSHQDHLDNNPALEKLLP 298
           +G  H+  +S Q H+D+N  L KLLP
Sbjct: 19  NGVSHSANESPQHHIDDNNNLNKLLP 44


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 372 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 262
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


>SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +3

Query: 156 DNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRATLASCSPA 335
           D +G QQ +  ++ L      L+G   + R+  +    T   SR C    +    SCS  
Sbjct: 1   DGIGQQQPKLYKLVLPNFGFQLIGYPGIYRQTGRGEEVTWHGSRTCTLHRKLAGVSCSCC 60

Query: 336 ETSLRSVTNCWRT 374
             SL      W T
Sbjct: 61  GNSLLHTHFTWTT 73


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 153  ADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTT 263
            + +VGS + QQ+R  +  SS V  G+N  +R  +K+T
Sbjct: 1309 SSHVGSGRNQQVRKHVEVSSHVGSGRNQQVRHPLKST 1345


>SB_56030| Best HMM Match : Somatostatin (HMM E-Value=2.1)
          Length = 348

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 526 VDDFNSPFEXLVGIERAWKKEVF 458
           ++DFN P+  LVG++R  K++ F
Sbjct: 56  LEDFNGPYAHLVGMKRYLKRDRF 78


>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
          Length = 342

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 258 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 362
           TTWT ++ S       R  LA CS   TS R+ TN
Sbjct: 67  TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,135,228
Number of Sequences: 59808
Number of extensions: 388062
Number of successful extensions: 1005
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)