Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0346
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    28   0.060
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   4.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 28.3 bits (60), Expect = 0.060
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 347 EVRDKLLENKVQAPARPGAIAPLSVV-IPAHNTGPRSREDLFLPGSFYPXQXFKGTIEII 523
           E  D L     +     G +   SV+ +P H T PRS+E++ L    +  Q F  +I  +
Sbjct: 25  EAFDSLHAGNAEKTLCSGQVCLGSVMQLPIHGTEPRSKEEILLHAKDFLEQYF-SSIRRL 83

Query: 524 NDVXH 538
           N   H
Sbjct: 84  NSEAH 88


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 304 DVWQQFLEGWIVVQVVLMALRIIVFFPMST 215
           D++ Q  E W  V +V+  L++ +FF ++T
Sbjct: 462 DLYIQTREDWKYVAMVIDRLQLYIFFLVTT 491


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 333 RVNTKPTLPLMCGNSFSRAGLL 268
           R +T P    +CG +FSR  LL
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLL 58


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 395 DELELGLCSPTVCHGPQR 342
           D +E G+  PT C G  +
Sbjct: 361 DAVEYGIIGPTTCMGDHK 378


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 386 PARPGAIAPLSVVIPAHNTGPRSREDLFL 472
           P + G   P S+ IPAH        D+F+
Sbjct: 73  PMQLGRRQPFSLFIPAHRKIAARLIDIFM 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,429
Number of Sequences: 438
Number of extensions: 3369
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)