Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0346
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 88 5e-18
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 87 8e-18
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 85 3e-17
At5g13510.1 68418.m01560 ribosomal protein L10 family protein ri... 30 1.3
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 30 1.3
At5g13260.1 68418.m01523 expressed protein 29 3.1
At2g33350.1 68415.m04088 hypothetical protein 29 3.1
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 28 4.1
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 5.4
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 5.4
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont... 27 9.5
At3g08670.1 68416.m01007 expressed protein 27 9.5
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 27 9.5
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 27 9.5
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 87.8 bits (208), Expect = 5e-18
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 5/162 (3%)
Frame = +3
Query: 96 YFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIK-----T 260
Y K+ QL+DEY + +V ADNVGS Q+Q IR L G S+VLMGKNTMM+++++ T
Sbjct: 13 YDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENT 72
Query: 261 TWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTT 440
T I + + + + V ++ + ++ LV P
Sbjct: 73 GNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAK-YKVGAPARVGLV--APIDVVVQPGN 129
Query: 441 PGLGPEKTSFFQALSIPTKXSKGLLKSSTMXHILXXGDKXWS 566
GL P +TSFFQ L+IPTK +KG ++ T ++ GDK S
Sbjct: 130 TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGS 171
Score = 78.6 bits (185), Expect = 3e-15
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Frame = +2
Query: 224 GKKHNDAQSHQDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 397
GK +S + H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 398 GAIAPLSVVIPAHNTGPRSREDLFLPGSFYPXQXFKGTIEIINDV 532
G +AP+ VV+ NTG + F P + KGT+EII V
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPV 160
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 87.0 bits (206), Expect = 8e-18
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Frame = +3
Query: 96 YFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIKTTWTTI 275
Y K+ QL+DEY + +V ADNVGS Q+Q IR L G S+VLMGKNTMM+++++
Sbjct: 13 YDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI----- 67
Query: 276 QPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKS-KLQLVLVPLP-------HCQSSFP 431
S N +T+ L L + S ++ V P
Sbjct: 68 -HSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 126
Query: 432 PTTPGLGPEKTSFFQALSIPTKXSKGLLKSSTMXHILXXGDKXWS 566
P GL P +TSFFQ L+IPTK +KG ++ T ++ GDK S
Sbjct: 127 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGS 171
Score = 78.6 bits (185), Expect = 3e-15
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Frame = +2
Query: 224 GKKHNDAQSHQDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 397
GK +S + H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 398 GAIAPLSVVIPAHNTGPRSREDLFLPGSFYPXQXFKGTIEIINDV 532
G +AP+ VV+ NTG + F P + KGT+EII V
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPV 160
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 85.0 bits (201), Expect = 3e-17
Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 5/162 (3%)
Frame = +3
Query: 96 YFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLXGSSIVLMGKNTMMRKAIK--TTWT 269
Y K+ QLL+EY + +V ADNVGS Q+Q IR L G S+VLMGKNTMM+++++ T
Sbjct: 14 YDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKT 73
Query: 270 TIQPSRNCCHTSRATLASCSPAETSLRSVTN---CWRTKSKLQLVLVPLPHCQSSFPPTT 440
Q + + + + L+ V+ ++ + ++ LV P
Sbjct: 74 GNQAFLSLLPLLQGNVGLIF-TKGDLKEVSEEVAKYKVGAPARVGLV--APIDVVVQPGN 130
Query: 441 PGLGPEKTSFFQALSIPTKXSKGLLKSSTMXHILXXGDKXWS 566
GL P +TSFFQ L+IPTK +KG ++ T ++ GDK S
Sbjct: 131 TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGS 172
Score = 77.4 bits (182), Expect = 7e-15
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Frame = +2
Query: 224 GKKHNDAQSHQDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 397
GK +S + H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 57 GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116
Query: 398 GAIAPLSVVIPAHNTGPRSREDLFLPGSFYPXQXFKGTIEIINDV 532
G +AP+ VV+ NTG + F P + KGT+EII V
Sbjct: 117 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPV 161
>At5g13510.1 68418.m01560 ribosomal protein L10 family protein
ribosomal protein L10- Nicotiana tabacum, EMBL:AB010879
Length = 220
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 171 QQMQQIRISLXGSSIVLMGKNTMMRKAIK-TTWTTIQP 281
+Q Q +R +L ++ +++ KNT++ KAI+ T W ++P
Sbjct: 76 KQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEALKP 113
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 269 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPAHN 439
N P ++K PHI VGF+ T+GD+ + D KL+ + A L+ V P+ N
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKLMGDYDTNGAWKIVELALACVNPSSN 840
Query: 440 TGP 448
P
Sbjct: 841 RRP 843
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 219 ARYWSXXARYGSAASVASPRYRH 151
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At2g33350.1 68415.m04088 hypothetical protein
Length = 440
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 414 CQSSFPPTTPGLGPEKTSFFQALSIPTKXSKGLLKSST 527
C SS P GL P SFF++ +P S GLL + +
Sbjct: 211 CLSSVPSYNLGLNPS-CSFFRSSGLPAYMSTGLLSAES 247
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 468 KRSSL-DRGPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTS 346
K SS+ D G ++G + +NGA A W L N LS+ S
Sbjct: 598 KHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLLINKLSKMS 639
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 420 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 307
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 279 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 383
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -1
Query: 436 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 290
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1501
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 206 LQYRAHGKKHNDAQSHQDHLDNNPALEKLLPHIKGNVG 319
+Q ++G A + HLDNN +LEK +PH+ G
Sbjct: 617 MQRTSYGFGIAGAGNDSRHLDNN-SLEKAIPHLNSRDG 653
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 450 RGPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLM 301
R P + T ++ GRA + SLSR S+ PRV P P++
Sbjct: 275 RSPSSTSLSATSGPTISGGRAASNGRTGPSLSRPSSPGPRVRNTPQQPIV 324
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = -2
Query: 474 GRKRSSLDRGPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRT 349
G+K S + GP W PG AG W + S T
Sbjct: 395 GKKNSETESGPAAWGAWDKKKSETEPGPAG-WGMGDKKNSET 435
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 263 LDNNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLLENK 376
+ N P ++++ PHI VG + T+GD+ + D L +
Sbjct: 761 ITNQPVIQQVREKPHIAEWVGLMLTKGDIKSIMDPKLNGE 800
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,859
Number of Sequences: 28952
Number of extensions: 258755
Number of successful extensions: 787
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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