Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0345
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   137   1e-33
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.7  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   9.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  137 bits (331), Expect = 1e-33
 Identities = 61/97 (62%), Positives = 73/97 (75%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EV+K++P QKQT       FKAFV I D+ GH+GLG+KC K VA AI GAI + KLS+ 
Sbjct: 77  DEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIM 136

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           P+RRGYWG   G PHTVP KV+GKCGSV VRL+PAPR
Sbjct: 137 PIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPR 173



 Score = 71.3 bits (167), Expect = 9e-14
 Identities = 31/71 (43%), Positives = 43/71 (60%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P   G+V+APV K+ LQ+AG++DCYT +RGST  LGNF              LTP+LW +
Sbjct: 172 PRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAE 231

Query: 82  IPLTKSPYSEF 50
            P  ++P  E+
Sbjct: 232 RPFGQTPIEEY 242


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 126 LPRHMPTSLLTCGG 85
           LPR +PTSLLT  G
Sbjct: 27  LPRSIPTSLLTAAG 40


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 206 WCTGLLHVSSWFNWXLGKFC*SHIRCHCQD 117
           WC     +SSWFN  L K    +++  CQ+
Sbjct: 59  WCM----LSSWFNSKLSKLSAGYLQFDCQN 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,850
Number of Sequences: 5004
Number of extensions: 37924
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)