Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0345
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      152   2e-37
07_01_0756 + 5819367-5820038,5820847-5821005                          151   3e-37
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     51   7e-07
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    30   1.1  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  152 bits (369), Expect = 2e-37
 Identities = 70/97 (72%), Positives = 77/97 (79%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EV+KI P QKQT       FKAFV + DN GH+GLGVKC K VA AI GAI LAKLSV 
Sbjct: 87  DEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVV 146

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           PVRRGYWGNK G+PHTVPCKVTGKCGSV VR++PAPR
Sbjct: 147 PVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPR 183



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 35/71 (49%), Positives = 45/71 (63%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P  +GIV+A VPKK+LQ AG++D +TS+RGST  LGNF             +LTPD WRD
Sbjct: 182 PRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRD 241

Query: 82  IPLTKSPYSEF 50
               KSP+ E+
Sbjct: 242 TKFVKSPFQEY 252


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  151 bits (367), Expect = 3e-37
 Identities = 70/97 (72%), Positives = 76/97 (78%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EV+KI P QKQT       FKAFV + D  GH+GLGVKC K VA AI GAI LAKLSV 
Sbjct: 90  DEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVV 149

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           PVRRGYWGNK GKPHTVPCKVTGKCGSV VR++PAPR
Sbjct: 150 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 186



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/71 (46%), Positives = 45/71 (63%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P  +GIV+A VPKK+LQ AG++D +TS+RGST  LGNF             +LTPD WR+
Sbjct: 185 PRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRE 244

Query: 82  IPLTKSPYSEF 50
               K+P+ E+
Sbjct: 245 TRFIKTPFQEY 255


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 32/73 (43%), Positives = 38/73 (52%)
 Frame = -3

Query: 477 FVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVXPVRRGYWGNKXGKPHTVPCKVTG 298
           FV + D   HI LGVKC K  A  + GAI LA             ++  KPHTV CKV  
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILAMFRCAEGATRETISR--KPHTVSCKVAD 57

Query: 297 KCGSVXVRLIPAP 259
           K GSV VR++  P
Sbjct: 58  KYGSVTVRMMLPP 70



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNF 149
           P  + +V+  VPKK+L+ AG++D +TS+RGST  L NF
Sbjct: 70  PMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 486 FKAFVAIXDNXGHIGLGVKCXKXVAXAIXGA 394
           F+A V + D  GH+G+GV   K V  AI  A
Sbjct: 192 FRAIVVVGDMKGHVGVGVGKAKEVTEAITKA 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,901
Number of Sequences: 37544
Number of extensions: 280972
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)