Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0345
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              157   7e-39
SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)                   28   5.8  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  157 bits (380), Expect = 7e-39
 Identities = 75/97 (77%), Positives = 78/97 (80%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EVLKIMP QKQT       FKAFVAI D+ GH+GLGVKC K VA AI GAI LAKLSV 
Sbjct: 52  DEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVI 111

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           PVRRGYWGNK GKPHTVPCKVTGKCGS  VRLIPAPR
Sbjct: 112 PVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRLIPAPR 148



 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 42/71 (59%), Positives = 48/71 (67%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P  TGIVSAPVPKKLLQMAG++DCYTS RG T  LGNF             YLTPD+W++
Sbjct: 147 PRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNFAKATFAAISETYAYLTPDMWKE 206

Query: 82  IPLTKSPYSEF 50
              TK+PY EF
Sbjct: 207 TVFTKTPYQEF 217


>SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1533

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 160 RXQLNHELTCSNPVHQPSEEAS*-ELAQTQYQYTRGRNQPDXYGTTLAGDLARDGVWLSX 336
           +  LN++   + P H  +  +S  +L+Q  +QY     +PD    T A DLAR    L  
Sbjct: 519 KIHLNYDFATA-PEHMAALPSSAIQLSQDDHQYLVAEKRPDCLDATPATDLARVDACLPA 577

Query: 337 LVTP 348
           +  P
Sbjct: 578 IAVP 581


>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
          Length = 733

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 468 IXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVXP-VRRGYWGNKXGKPHTVPCKVTGKC 292
           I D+ G   + V+  K       G++    L+  P +RRG  G++  KPH+ P  ++ + 
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARF 195

Query: 291 GS 286
           GS
Sbjct: 196 GS 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,944
Number of Sequences: 59808
Number of extensions: 308934
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)