Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0345
         (548 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   161   7e-40
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   161   7e-40
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   161   7e-40
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   161   7e-40
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   161   7e-40

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  161 bits (390), Expect = 7e-40
 Identities = 78/97 (80%), Positives = 79/97 (81%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EVLKIMP QKQT       FKAFVAI DN GHIGLGVKC K VA AI GAI LAKLSV 
Sbjct: 87  DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           PVRRGYWGNK GKPHTVPCKVTGKCGSV VRLIPAPR
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPR 183



 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 42/71 (59%), Positives = 50/71 (70%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P  TGIVSAPVP+KLL MAG++DCYTSARGSTG LGNF             YLTPDLW++
Sbjct: 182 PRGTGIVSAPVPRKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKE 241

Query: 82  IPLTKSPYSEF 50
           +PL  +PY  +
Sbjct: 242 MPLGSTPYQAY 252


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  161 bits (390), Expect = 7e-40
 Identities = 78/97 (80%), Positives = 79/97 (81%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EVLKIMP QKQT       FKAFVAI DN GHIGLGVKC K VA AI GAI LAKLSV 
Sbjct: 87  DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           PVRRGYWGNK GKPHTVPCKVTGKCGSV VRLIPAPR
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPR 183



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 43/71 (60%), Positives = 50/71 (70%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P  TGIVSAPVPKKLL MAG++DCYTSARGSTG LGNF             YLTPDLW++
Sbjct: 182 PRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKE 241

Query: 82  IPLTKSPYSEF 50
           +PL  +PY  +
Sbjct: 242 MPLGSTPYQAY 252


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  161 bits (390), Expect = 7e-40
 Identities = 78/97 (80%), Positives = 79/97 (81%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EVLKIMP QKQT       FKAFVAI DN GHIGLGVKC K VA AI GAI LAKLSV 
Sbjct: 87  DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           PVRRGYWGNK GKPHTVPCKVTGKCGSV VRLIPAPR
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPR 183



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 43/71 (60%), Positives = 50/71 (70%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P  TGIVSAPVPKKLL MAG++DCYTSARGSTG LGNF             YLTPDLW++
Sbjct: 182 PRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKE 241

Query: 82  IPLTKSPYSEF 50
           +PL  +PY  +
Sbjct: 242 MPLGSTPYQAY 252


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  161 bits (390), Expect = 7e-40
 Identities = 78/97 (80%), Positives = 79/97 (81%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EVLKIMP QKQT       FKAFVAI DN GHIGLGVKC K VA AI GAI LAKLSV 
Sbjct: 87  DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           PVRRGYWGNK GKPHTVPCKVTGKCGSV VRLIPAPR
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPR 183



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 43/71 (60%), Positives = 50/71 (70%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P  TGIVSAPVPKKLL MAG++DCYTSARGSTG LGNF             YLTPDLW++
Sbjct: 182 PRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKE 241

Query: 82  IPLTKSPYSEF 50
           +PL  +PY  +
Sbjct: 242 MPLGSTPYQAY 252


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  161 bits (390), Expect = 7e-40
 Identities = 78/97 (80%), Positives = 79/97 (81%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EVLKIMP QKQT       FKAFVAI DN GHIGLGVKC K VA AI GAI LAKLSV 
Sbjct: 87  DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           PVRRGYWGNK GKPHTVPCKVTGKCGSV VRLIPAPR
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPR 183



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 43/71 (60%), Positives = 50/71 (70%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P  TGIVSAPVPKKLL MAG++DCYTSARGSTG LGNF             YLTPDLW++
Sbjct: 182 PRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKE 241

Query: 82  IPLTKSPYSEF 50
           +PL  +PY  +
Sbjct: 242 MPLGSTPYQAY 252


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,514,572
Number of Sequences: 53049
Number of extensions: 462690
Number of successful extensions: 1053
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)