Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0345
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   148   3e-36
Z81034-5|CAB02730.1|  198|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  148 bits (358), Expect = 3e-36
 Identities = 71/97 (73%), Positives = 75/97 (77%)
 Frame = -3

Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
           +EVLKI P QKQT       FKAFVAI D+ GH+GLGVKC K VA AI GAI  AKL+V 
Sbjct: 100 DEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVV 159

Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
           PVRRGYWGNK G PHTVPCKVTGKC SV VRLIPAPR
Sbjct: 160 PVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPR 196



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 41/68 (60%), Positives = 47/68 (69%)
 Frame = -2

Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
           P  TGIVSAPVPKKLL MAG++DCYT+A+GST  LGNF             YLTPDLW++
Sbjct: 195 PRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKE 254

Query: 82  IPLTKSPY 59
             L KSPY
Sbjct: 255 EALEKSPY 262


>Z81034-5|CAB02730.1|  198|Caenorhabditis elegans Hypothetical
           protein C15C6.4 protein.
          Length = 198

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 394 SASNGXGDXLXALHTQTNMTXVVXNGNKCLENVXXVRERL 513
           S S G GD L  LH + N+T      +K  E     R RL
Sbjct: 13  STSRGGGDRLGVLHLEKNVTSHFKRKSKKTEKTNLTRGRL 52


>Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical
           protein ZC15.8 protein.
          Length = 109

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 229 ELAQTQYQYTRGRNQPDXYGTT 294
           + +  QYQ TRG NQ   YG T
Sbjct: 32  QYSNNQYQTTRGYNQQQQYGQT 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,737,371
Number of Sequences: 27780
Number of extensions: 222539
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)