Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0345
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 154 4e-38
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 154 4e-38
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 154 4e-38
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 154 4e-38
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 154 4e-38
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 153 6e-38
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 29 2.7
At1g72390.1 68414.m08373 expressed protein 27 8.3
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 154 bits (373), Expect = 4e-38
Identities = 71/97 (73%), Positives = 77/97 (79%)
Frame = -3
Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
+EV+KIMP QKQT FKAFV + D GH+GLGVKC K VA AI GAI LAKLSV
Sbjct: 98 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 157
Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
PVRRGYWGNK GKPHTVPCKVTGKCGSV VR++PAPR
Sbjct: 158 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 194
Score = 70.1 bits (164), Expect = 9e-13
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = -2
Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
P +GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP+ W++
Sbjct: 193 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 252
Query: 82 IPLTKSPYSE 53
++SPY E
Sbjct: 253 TRFSRSPYQE 262
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 154 bits (373), Expect = 4e-38
Identities = 71/97 (73%), Positives = 77/97 (79%)
Frame = -3
Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
+EV+KIMP QKQT FKAFV + D GH+GLGVKC K VA AI GAI LAKLSV
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
PVRRGYWGNK GKPHTVPCKVTGKCGSV VR++PAPR
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 193
Score = 70.1 bits (164), Expect = 9e-13
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = -2
Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
P +GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP+ W++
Sbjct: 192 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 251
Query: 82 IPLTKSPYSE 53
++SPY E
Sbjct: 252 TRFSRSPYQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 154 bits (373), Expect = 4e-38
Identities = 71/97 (73%), Positives = 77/97 (79%)
Frame = -3
Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
+EV+KIMP QKQT FKAFV + D GH+GLGVKC K VA AI GAI LAKLSV
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
PVRRGYWGNK GKPHTVPCKVTGKCGSV VR++PAPR
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 193
Score = 70.1 bits (164), Expect = 9e-13
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = -2
Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
P +GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP+ W++
Sbjct: 192 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 251
Query: 82 IPLTKSPYSE 53
++SPY E
Sbjct: 252 TRFSRSPYQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 154 bits (373), Expect = 4e-38
Identities = 71/97 (73%), Positives = 77/97 (79%)
Frame = -3
Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
+EV+KIMP QKQT FKAFV + D GH+GLGVKC K VA AI GAI LAKLSV
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
PVRRGYWGNK GKPHTVPCKVTGKCGSV VR++PAPR
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 193
Score = 70.1 bits (164), Expect = 9e-13
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = -2
Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
P +GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP+ W++
Sbjct: 192 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 251
Query: 82 IPLTKSPYSE 53
++SPY E
Sbjct: 252 TRFSRSPYQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 154 bits (373), Expect = 4e-38
Identities = 71/97 (73%), Positives = 77/97 (79%)
Frame = -3
Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
+EV+KIMP QKQT FKAFV + D GH+GLGVKC K VA AI GAI LAKLSV
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
PVRRGYWGNK GKPHTVPCKVTGKCGSV VR++PAPR
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 193
Score = 70.1 bits (164), Expect = 9e-13
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = -2
Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
P +GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP+ W++
Sbjct: 192 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 251
Query: 82 IPLTKSPYSE 53
++SPY E
Sbjct: 252 TRFSRSPYQE 261
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 153 bits (372), Expect = 6e-38
Identities = 69/97 (71%), Positives = 78/97 (80%)
Frame = -3
Query: 546 NEVLKIMPXQKQTFPDXXHVFKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVX 367
+EV+KIMP QKQT FKAF+ + D+ GH+GLGVKC K VA AI GAI LAKLSV
Sbjct: 89 DEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVV 148
Query: 366 PVRRGYWGNKXGKPHTVPCKVTGKCGSVXVRLIPAPR 256
P+RRGYWGNK GKPHTVPCKVTGKCGSV VR++PAPR
Sbjct: 149 PIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 185
Score = 71.3 bits (167), Expect = 4e-13
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = -2
Query: 262 PSCTGIVSAPVPKKLLQMAGVQDCYTSARGSTGXLGNFXXXXXXXXXXXXXYLTPDLWRD 83
P +GIV+A VPKK+LQ AG+ D +TS+RGST LGNF +LTP+ W++
Sbjct: 184 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKE 243
Query: 82 IPLTKSPYSE 53
+KSPY E
Sbjct: 244 TRFSKSPYQE 253
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = -3
Query: 486 FKAFVAIXDNXGHIGLGVKCXKXVAXAIXGAIXLAKLSVXPVRRGYWGNKXGKPHTVPCK 307
F+A V + D G++G+G K V A+ + S RR K T P +
Sbjct: 169 FRAIVVVGDKQGNVGVGCAKAKEVVAAV-------QKSAIDARRNIVQVPMTKYSTFPHR 221
Query: 306 VTGKCGSVXVRLIPA 262
G G+ V L PA
Sbjct: 222 SEGDYGAAKVMLRPA 236
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 112 HMSWQWQRMWL*QNFPRXQLNHELTCSNPVHQPSEEAS*ELAQTQYQYTRGRNQP 276
+M+ Q Q+ L Q + QL H+ P+ QPS++ + + Q Q + QP
Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLA--QSPQQQQQLQQHEQP 972
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,174,894
Number of Sequences: 28952
Number of extensions: 214276
Number of successful extensions: 447
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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