Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0344
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 118 1e-27
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 116 3e-27
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928 29 0.84
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006... 29 1.1
07_01_0697 + 5265079-5266281 28 1.5
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 28 1.9
07_01_0385 - 2871628-2872131 28 1.9
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.6
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 27 3.4
02_01_0679 - 5048653-5051394 27 4.5
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 26 5.9
07_03_0039 - 12718972-12720699 26 7.8
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 118 bits (283), Expect = 1e-27
Identities = 50/77 (64%), Positives = 60/77 (77%)
Frame = +3
Query: 24 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 203
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 204 CKRTVAGGAWVFSTTAA 254
C + AGGA+ +T +A
Sbjct: 85 CGKVKAGGAYTMNTASA 101
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 116 bits (280), Expect = 3e-27
Identities = 50/74 (67%), Positives = 58/74 (78%)
Frame = +3
Query: 33 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 212
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 213 TVAGGAWVFSTTAA 254
AGGA+ +T +A
Sbjct: 93 VKAGGAYTMNTASA 106
>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
Length = 244
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 200 AMQEDCSR--RSLGILHYCCPSCRSAV-RRLRE 289
A EDC R + GIL Y C SCR+ V ++RE
Sbjct: 145 AQDEDCFRWNNAAGILCYGCESCRAGVMEKVRE 177
>05_04_0224 -
19198722-19198835,19198947-19199436,19200478-19200641,
19202534-19202632,19204069-19204175,19204278-19204401,
19205113-19205242,19205314-19205433,19205861-19206002,
19207243-19207326,19207651-19207742,19207855-19207944,
19208057-19208136,19208312-19208451,19208587-19209067
Length = 818
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 173 FLCRHLVL*AMQEDCSRRSLGILHYCCPSCRSAVRRLREVK 295
F CRHL M +C++ +L CP CR V +L E+K
Sbjct: 776 FPCRHL---CMCSECAK-TLRFQTDKCPICRQPVEKLMEIK 812
>07_01_0697 + 5265079-5266281
Length = 400
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 159 DAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAAHH 260
DA++R C G W +C R GG F A +H
Sbjct: 19 DALQRFC-GAWRDMQCSRRGGGGGDAFVVGAVYH 51
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +2
Query: 101 GQKDGSNPTRKVYLLILW*GCYETFLCRHLVL*AMQEDCSRRSLGILHYC---CPSCRSA 271
G +G++P ++ + + CRH+ M +C++ +L Y CP CR
Sbjct: 333 GDTEGNDPGKECVICLSEPRDTTVLPCRHM---CMCSECAK----VLRYQTNRCPICRQP 385
Query: 272 VRRLREVK 295
V RL E+K
Sbjct: 386 VERLLEIK 393
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 135 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 233
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 114 EVTQHAKYTCSFCGKDAM 167
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 101 GQKDGSNPTRKVYLLILW*GCYETFLCRHLVL*AMQEDCSRRSLGILHYC---CPSCRSA 271
G D ++P ++ + + CRH+ M +C++ +L Y CP CR
Sbjct: 328 GDADANDPGKECVICLSEPRDTTVLPCRHM---CMCSECAK----VLRYQTTRCPICRQP 380
Query: 272 VRRLREVK 295
V RL E+K
Sbjct: 381 VERLLEIK 388
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +1
Query: 1 VLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 117
VL LP VPK LELLA++ + V L V+W + WK
Sbjct: 858 VLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +3
Query: 6 VSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCV 182
+ RF ++V K G Y L K AKYT G A RS
Sbjct: 63 MKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDRSSA 122
Query: 183 GIWSCKRCKRTV 218
G SCK ++ V
Sbjct: 123 GAVSCKLREKNV 134
>07_03_0039 - 12718972-12720699
Length = 575
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 241 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 89
EN A +LH +D + QERF L + + C + S+F IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,548,533
Number of Sequences: 37544
Number of extensions: 199863
Number of successful extensions: 535
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -