Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0342
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    83   2e-17
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    62   5e-11

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 39/52 (75%), Positives = 44/52 (84%)
 Frame = +2

Query: 257 LTLSEKILYSHLDXPKGQEIERGASYLRLXPDRVAXQDATAQMAMLQFISSG 412
           LT SEKILY HLD P  Q+IERG SYL+L PDRVA QDATAQMA+LQF+S+G
Sbjct: 59  LTYSEKILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAG 110



 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
 Frame = +3

Query: 126 RCFSVSPLXAA--AAQVAMSKFDKVP-LXYEKLTKNLEVVKKRLGRN*PCLRKSYILTWM 296
           R FS +P+ A   A +VAMS F+K   + Y+++  NLE+VKKRL R      K       
Sbjct: 12  RSFSCAPVAANIDAKKVAMSNFEKNKFINYQRIKDNLEIVKKRLNRPLTYSEKILYGHLD 71

Query: 297 XPKXRKLNAAQVISACXPTVWPXKTPLHKWXCYNLSLPGLPRXAVPSTIHCDHLIRS 467
            P  + +          P     +    +         G+P  AVP T+HCDHLI +
Sbjct: 72  DPVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVPVTVHCDHLIEA 128


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 6/59 (10%)
 Frame = +2

Query: 254 KLTLSEKILYSHLDXPK------GQEIERGASYLRLXPDRVAXQDATAQMAMLQFISSG 412
           KLTL+EK+LYSHL  P+           RG+ YL+L PDRVA QDA+AQMA+LQF++ G
Sbjct: 56  KLTLAEKVLYSHLVNPEESFSGVSPSDIRGSLYLKLNPDRVAMQDASAQMALLQFMTCG 114



 Score = 29.9 bits (64), Expect = 0.26
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 411 GLPRXAVPSTIHCDHLI 461
           GL +  +P++IHCDHLI
Sbjct: 114 GLEKTMIPASIHCDHLI 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,995
Number of Sequences: 5004
Number of extensions: 26395
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)