Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0342
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842...    28   5.6  
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350...    27   7.5  
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    27   9.9  

>09_02_0607 -
           11183382-11183387,11183481-11183637,11184220-11184284,
           11184397-11184469,11184759-11184905,11185515-11185562,
           11185637-11185716,11186112-11186439,11186525-11186576,
           11187397-11187523,11187613-11187990
          Length = 486

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 120 GXQRVPPLSCYPXHAKLSYSAPWSP 46
           G +R+P L C+P   +L+    WSP
Sbjct: 202 GFKRIPSLECWPDVLQLTEPENWSP 226


>05_01_0442 -
           3500849-3500866,3500950-3501027,3501260-3501352,
           3501419-3501536,3502815-3502945,3503027-3503299,
           3504825-3504882,3505065-3505388,3507404-3507852,
           3509514-3509554,3510263-3510412,3510519-3510906
          Length = 706

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 148 NGDTLKHLCWXSESTTLVLLPXPCKTLIQCAM 53
           +GD +  L W  E   +  LP P  T+I C +
Sbjct: 109 SGDPMDFLKWDKEFRRICALPEPAGTVIPCTV 140


>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
            23187887-23188159,23188275-23188338,23188479-23188744,
            23188951-23189045,23189544-23189718,23190669-23191063,
            23191830-23191953,23192864-23192959,23193049-23193120,
            23194687-23194824,23195369-23195549,23195602-23195963,
            23196944-23197386,23197461-23197763,23197857-23198081,
            23198260-23198350,23198702-23198779,23198939-23199229,
            23199316-23199513,23199681-23200163,23200488-23200562,
            23201163-23201324,23201400-23201729,23201816-23201916,
            23202477-23202581,23202931-23203162,23203913-23204257,
            23204346-23204447,23206010-23206153,23206463-23206551,
            23206979-23207061,23207172-23207287,23207824-23207909,
            23208461-23208560,23209270-23209335
          Length = 2451

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 327  QVISACXPTVWPXKTPLHKWXCYNLSLPGLPR 422
            ++ISAC P V+P +T    W C  L LP L +
Sbjct: 1065 EIISACVPPVFPPRTG-QGWACIPL-LPTLSK 1094


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,634
Number of Sequences: 37544
Number of extensions: 212289
Number of successful extensions: 405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)