Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0342
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)               36   0.029
SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)                    29   3.3  
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)                    27   7.6  

>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
          Length = 193

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 393 YNLSLPGLPRXAVPSTIHCDHLIRS 467
           +++SL    + AVPSTIHCDHLI +
Sbjct: 97  FSVSLSSWQKVAVPSTIHCDHLIEA 121


>SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)
          Length = 504

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 369 TPLHKWXCYNLSLPGLPRXAVPSTI 443
           TPL KW  YN+   G P+ A+  T+
Sbjct: 433 TPLSKWNPYNIDYKGDPKYALGKTV 457


>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
          Length = 387

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 190 LSNLDIATWAAAAXNGDTLKH 128
           L N+ IATWA    N +T KH
Sbjct: 142 LRNVAIATWALVLANSNTFKH 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,301,823
Number of Sequences: 59808
Number of extensions: 210681
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)