Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0342
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...    93   2e-19
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    70   1e-12
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    39   0.003
AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical ...    27   6.7  

>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 45/52 (86%), Positives = 46/52 (88%)
 Frame = +2

Query: 257 LTLSEKILYSHLDXPKGQEIERGASYLRLXPDRVAXQDATAQMAMLQFISSG 412
           LTLSEKILY HLD PK Q+IERG SYLRL PDRVA QDATAQMAMLQFISSG
Sbjct: 60  LTLSEKILYGHLDQPKTQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSG 111



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
 Frame = +3

Query: 162 AQVAMSKFD-KVPLXYEKLTKNLEVVKKRLGRN*PCLRKSYILTWMXPKXRKLNAAQVIS 338
           ++VA+SKF+ K  L YEKL++ +++VK RL R      K        PK + +       
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKTQDIERGVSYL 86

Query: 339 ACXPTVWPXKTPLHKWXCYNLSLPGLPRXAVPSTIHCDHLIRS 467
              P     +    +         GLP+ AVPSTIHCDHLI +
Sbjct: 87  RLRPDRVAMQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEA 129


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 34/44 (77%), Positives = 35/44 (79%)
 Frame = +2

Query: 257 LTLSEKILYSHLDXPKGQEIERGASYLRLXPDRVAXQDATAQMA 388
           LTLSEKILY HLD PK Q+IERG SYLRL PDRVA QDA   MA
Sbjct: 60  LTLSEKILYGHLDQPKTQDIERGVSYLRLRPDRVAMQDAVDVMA 103



 Score = 31.5 bits (68), Expect = 0.41
 Identities = 16/32 (50%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
 Frame = +3

Query: 162 AQVAMSKFD-KVPLXYEKLTKNLEVVKKRLGR 254
           ++VA+SKF+ K  L YEKL++ +++VK RL R
Sbjct: 27  SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKR 58


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +3

Query: 411 GLPRXAVPSTIHCDHLIRS 467
           GLP+ AVPSTIHCDHLI +
Sbjct: 17  GLPKTAVPSTIHCDHLIEA 35



 Score = 34.7 bits (76), Expect = 0.044
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +2

Query: 365 QDATAQMAMLQFISSG 412
           QDATAQMAMLQFISSG
Sbjct: 2   QDATAQMAMLQFISSG 17


>AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical
           protein F41B4.1 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 360 PXKTPLHKWXCYNLSLPGLPRXAVPSTIHCDHLIRSPSXRXRXDLXQGXRPQ 515
           P KTP HK+     SL   P   +      D L+ S +     ++ QG  P+
Sbjct: 62  PRKTPSHKYEEMRRSLSRGPSSTLERYSSMDKLLGSQNREKNVEIEQGINPR 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,654,944
Number of Sequences: 27780
Number of extensions: 155732
Number of successful extensions: 280
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)