Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0340
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0PV85 Cluster: FGF9/16/20; n=2; Chordata|Rep: FGF9/16/...    37   0.35 
UniRef50_Q7MZR7 Cluster: Similar to unknown protein of Photorhab...    36   0.62 
UniRef50_A6MFP4 Cluster: Ubiquitin ligase; n=9; Euteleostomi|Rep...    33   4.4  
UniRef50_Q5NYQ6 Cluster: Acetoacetate metabolism regulatory prot...    33   5.8  
UniRef50_A1ZFW7 Cluster: Peptidase, S9A/B/C families, catalytic ...    32   7.6  
UniRef50_A7SL59 Cluster: Predicted protein; n=2; Nematostella ve...    32   7.6  
UniRef50_P38205 Cluster: tRNA (cytosine-5-)-methyltransferase NC...    32   7.6  

>UniRef50_Q0PV85 Cluster: FGF9/16/20; n=2; Chordata|Rep: FGF9/16/20
           - Halocynthia roretzi (Sea squirt)
          Length = 330

 Score = 36.7 bits (81), Expect = 0.35
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -2

Query: 298 HQDTRACRSILSERFRRRIFKRHVHTLFFEPHVPRVIDPPWLPYHF 161
           H DTR+C   +S++ R R   R   +  F   +PR++DP  +P+H+
Sbjct: 280 HSDTRSCFVAISQQGRARSGCRSKESQKFTHFLPRLVDPRRVPWHY 325


>UniRef50_Q7MZR7 Cluster: Similar to unknown protein of Photorhabdus
           luminescens; n=2; Photorhabdus luminescens subsp.
           laumondii|Rep: Similar to unknown protein of
           Photorhabdus luminescens - Photorhabdus luminescens
           subsp. laumondii
          Length = 868

 Score = 35.9 bits (79), Expect = 0.62
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +2

Query: 104 QKNNRICQTLQEDPYFEIDEVIGKPWRIYYTWNMRFEKKCMDMTFKNATPKSFREYGTTC 283
           +K +RI +TL+E PY+E+     +P    Y W+ +    C D+T +    +     GT  
Sbjct: 201 RKVSRISRTLEEAPYYEVYHGALRPKSTLYPWSSK-RAGCADITVRAMQKRGLAADGTPV 259

Query: 284 TSILM 298
           + +L+
Sbjct: 260 SPVLI 264


>UniRef50_A6MFP4 Cluster: Ubiquitin ligase; n=9; Euteleostomi|Rep:
            Ubiquitin ligase - Mus musculus (Mouse)
          Length = 1889

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 92   PESFQKNN---RICQTLQEDPYFEIDEVIGKPWRIYYTWNMRFEKKCMDMTFKNATPKSF 262
            P S  +NN   R C    +D   E++E+ G+P       N+  E + +    KN T K +
Sbjct: 1375 PGSNVENNLWQRPCNKSTQDLIKEVEELQGRPGAFPSETNLSKEMESVMKDIKNTTQKKY 1434

Query: 263  REYGTT 280
            R+Y  T
Sbjct: 1435 RDYSKT 1440


>UniRef50_Q5NYQ6 Cluster: Acetoacetate metabolism regulatory protein
           atoC; n=3; Betaproteobacteria|Rep: Acetoacetate
           metabolism regulatory protein atoC - Azoarcus sp.
           (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 446

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = -2

Query: 403 LQRNCLRVLGRQKVASRAAPCPY*DVRWRHSSSAGHQDTRACRSILSERFRRRIFKR-HV 227
           +Q   LRVL   ++       P   V + H   A H D RA   +   RFR  ++ R HV
Sbjct: 247 MQAKLLRVLQEHRLQRLGGEAPL-AVEF-HLVCATHCDLRAM--VDEGRFRDDLYYRIHV 302

Query: 226 HTLFFEPHVPRVIDPPWLPYHFID 155
             L   P   R  D PW  +HF+D
Sbjct: 303 IHLRIPPLRERREDIPWFVHHFVD 326


>UniRef50_A1ZFW7 Cluster: Peptidase, S9A/B/C families, catalytic
           domain protein; n=2; Bacteroidetes|Rep: Peptidase,
           S9A/B/C families, catalytic domain protein - Microscilla
           marina ATCC 23134
          Length = 904

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +2

Query: 170 GKPWRIYYTWNMRFEKKCMDMTFKNATPKSFREYGTTCTSILMTSRTGMPPPYILVWARC 349
           GKP   YY WN++   K   +      P +F E+         TS     P     W   
Sbjct: 228 GKPRPAYYIWNLKTGTKTAVLKDTYQGPGNF-EFSEDNQGFYFTSTKSSDPE----WGGA 282

Query: 350 G-TRCYFLPTKDPQAVSL 400
           G T+ +++  K+PQ V++
Sbjct: 283 GVTKLHYMTVKNPQVVNI 300


>UniRef50_A7SL59 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 282

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 178 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 59
           WLP H + F I   L S   S +FL  F F+ GH  +A N
Sbjct: 228 WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 267


>UniRef50_P38205 Cluster: tRNA (cytosine-5-)-methyltransferase NCL1;
           n=9; Saccharomycetales|Rep: tRNA
           (cytosine-5-)-methyltransferase NCL1 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 684

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +2

Query: 68  GQSMPKIKPESFQKNNRICQTLQEDPYFEID---EVIGKPWRIYYTWNMRFEKKCMDMTF 238
           G    KIK E  QK  R+ +   E+P+  +D   E +   W  Y   N+     C+    
Sbjct: 433 GPQTKKIKVEEVQKKERLPRDANEEPFVFVDPQHEALKVCWDFYGIDNIFDRNTCL---V 489

Query: 239 KNATPKSFREYGTTCTSI 292
           +NAT +  R   T C ++
Sbjct: 490 RNATGEPTRVVYTVCPAL 507


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,456,050
Number of Sequences: 1657284
Number of extensions: 13382132
Number of successful extensions: 34712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34704
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)