Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0340
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    26   3.2  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   4.2  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   4.2  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   5.6  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.3  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   9.7  

>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 302 SRTGMPPPYILVWARCGTRCYFLPTKDPQAV 394
           S TG+P P+I+  +R   R YF  T+  +++
Sbjct: 2   SNTGLPKPWIVKISRSRNRPYFFNTETHESL 32


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 341 PILRCKVAAFQFGWSSRYSCMSF 273
           P+LR K+AA   GW S  +C SF
Sbjct: 60  PLLRTKLAAIHEGWES--ACHSF 80


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 43   SFINRSCWRPINAQNKTGKFPEKQ*NMSDFTGRSVFRNR*SDREAMEDLLHVEHEV 210
            S++ R C   INA+ +TG +      MS  T    +RN   DR A E  L +E  +
Sbjct: 971  SWLYRGCVITINAEYETGDYQMILRRMSGTTIYRFWRNM-RDRGAFEKSLMMEQSM 1025


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 392 LPAGPWSAKSSISCRTLPILRC 327
           L  G W   ++ISC   P+L C
Sbjct: 128 LSKGSWEVTNTISCEKTPLLFC 149


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 316 HSSSAGHQDTRACRSILSERFRRRIFKRHVHTLF 215
           +SSS         R+IL E   R + K H+  +F
Sbjct: 86  YSSSLSRSPEEPLRTILVENLTRNVTKEHIAEIF 119


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 212 RTSCSTCNRSSMASLSLHRFRNTDLPVKSDIFYCFSG 102
           R       +S + SL     R   +PV+ + FYCF G
Sbjct: 139 RVFLENLRKSLVVSLDSAVNRTYSIPVEDEGFYCFVG 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,367
Number of Sequences: 5004
Number of extensions: 57378
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)