Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0340
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140 30 1.4
10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528... 29 2.4
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531... 29 3.2
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 29 3.2
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 28 4.3
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282... 28 4.3
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 28 5.6
11_03_0151 - 10816905-10816977,10817090-10817421,10817884-108179... 27 7.5
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790... 27 7.5
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 7.5
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 27 7.5
03_01_0355 - 2789680-2791263 27 9.9
>10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140
Length = 309
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 416 ATLGTPEKLPAGPWSAKSSISCRTLPILRCKVAAFQFGWS-SRYSCM 279
AT GTP L AGP S +++P +C AA W+ S + C+
Sbjct: 23 ATPGTPAPLFAGPRVDSLSYERKSMPRCKCLPAAVAEAWAPSAHGCV 69
>10_02_0098 +
5286827-5287019,5287380-5287476,5287872-5287992,
5288458-5288511,5288868-5288918,5289004-5289099,
5289709-5289807,5289989-5290111,5290666-5290809,
5290902-5290973,5291053-5291128,5291208-5291350,
5291453-5291561,5291629-5291816,5292045-5292134,
5292256-5292438,5293187-5293360,5293466-5293537
Length = 694
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 543 WLIMTRFPCGSRHYEKLGAVDQFQLKLEEGYSVPVHSYTSIT 418
WL ++ CG H + + F L EEG + V T++T
Sbjct: 450 WLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVT 491
>06_03_0568 +
22351552-22351679,22352176-22352227,22353044-22353117,
22353233-22353322,22353833-22353976,22354885-22354973,
22355539-22355612,22357233-22357317,22357677-22357952,
22358392-22358420
Length = 346
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 181 PWLPYHFIDFEIRIFL*SLTYSIVFLE 101
PW+ IDF I +F S+ Y + FLE
Sbjct: 163 PWMAATLIDFYINVFAISVNYILWFLE 189
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 248 TPKSFREYGTTCTSIL 295
TPKSF+ Y TC SIL
Sbjct: 60 TPKSFKSYAETCASIL 75
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 455 GTVCRFTVILPSRATLGTPEK---LPAGPWSAKSSISCRTLPILRCKVAAF 312
G + + ++LP TL + LP GPW+A + P LR +V AF
Sbjct: 175 GDILKPDLVLPLMETLPIEQLASYLPEGPWTAGDILELLQSPPLRQQVEAF 225
>05_01_0361 -
2824728-2826043,2826288-2826507,2827616-2827702,
2827726-2827980,2828704-2828733
Length = 635
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 438 EPAHCTPPQVSTETGPRLQVSRNDDCHMGISSLS 539
+P H PQ+S T P + R D H+ I +S
Sbjct: 498 DPVHRNSPQISVATSPS-PIRRGDPAHINIPQIS 530
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 310 WNAATLHLSMGKVRHEMLLFADQG 381
W+A T L MG+ R LLFA G
Sbjct: 789 WSARTAALGMGRARRSKLLFAVDG 812
>11_03_0151 -
10816905-10816977,10817090-10817421,10817884-10817967,
10818045-10818092,10818233-10818287,10818378-10818433,
10818543-10818627,10819810-10819844
Length = 255
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 REYGTTCTSILMTSRTGMPPPYILVWARC-GTRCYFLPTKDPQAVSLEYL 409
R G T S ++T W R T +FLP K+PQ SLE+L
Sbjct: 157 RFLGQTLVSKQFITQTEATEFLACSWERLYSTIDFFLPAKNPQLKSLEFL 206
>07_03_0358 -
17177253-17177369,17177635-17177931,17178961-17179032,
17179117-17179383,17179752-17179910,17180194-17180295,
17180696-17180767,17181105-17181200,17181710-17181871,
17181941-17182021,17182837-17183094,17183173-17183275,
17183412-17183542,17184827-17184919,17184999-17185099,
17186271-17186355,17186487-17186701,17186779-17186842,
17187128-17187214,17188922-17189022,17190206-17190397,
17190533-17190599,17191211-17191351
Length = 1020
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -3
Query: 546 LWLIMTRFPCGSRHYEKLGAVDQFQLKLEEGYSVPVHSYTSITCHIRYSRETACGS 379
LWLI+ +R Y K G ++QF+ LEEG + Y + + R + A G+
Sbjct: 42 LWLII------AREYFKQGKIEQFRQILEEGSGPEIDEYYADVKYERIAILNALGA 91
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 236 FKNATPKSFREYGTTCTSILMTSRTGMPPPYILVWARCGTRC 361
+K +TP S G C +LM + TG + V R GT+C
Sbjct: 3487 YKWSTPFSIDANGVMC--VLMNNTTGNDQALVRVNVRSGTKC 3526
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 355 RAAPCPY*DVRWRHSSSAGHQDTR 284
+AAP P +VR++H+SS G +TR
Sbjct: 321 KAAPGPPAEVRYQHASSMGAVETR 344
>03_01_0355 - 2789680-2791263
Length = 527
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 168 ITSSISKYGSSCK-V*HILLFFWKLSGFILGIDWPPTTSINKTIANK 31
+ S +S +GSS K V L FF GF +G D+P + +I ANK
Sbjct: 113 VASGLS-FGSSAKGVVSTLCFFRFWLGFGIGGDYPLSATIMSEYANK 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,722
Number of Sequences: 37544
Number of extensions: 386475
Number of successful extensions: 968
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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