Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0340
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)                  32   0.27 
SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)           30   1.4  
SB_33658| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             28   4.4  
SB_13472| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011)         28   4.4  
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_5696| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   5.8  
SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.6  
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)
          Length = 241

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 178 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 59
           WLP H + F I   L S   S +FL  F F+ GH  +A N
Sbjct: 97  WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 136


>SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 178 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 59
           WLP H + F I   L S   S +FL  F F+ GH  +A N
Sbjct: 252 WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 291


>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
          Length = 806

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 438 EPAHCTPPQVSTETGPRLQVSRNDDCHMGISSL 536
           EPAH  P  ++TET P +Q     D    + SL
Sbjct: 393 EPAHLNPLPMTTETPPEIQAEMTKDTPQHVRSL 425


>SB_33658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 257 SFREYGTTCTSILMTSRTGMPPPYIL 334
           SF+EY T CT +L  S T    PY+L
Sbjct: 59  SFQEYATLCTLMLTCSVTKTAIPYLL 84


>SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 403

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 257 SFREYGTTCTSILMTSRTGMPPPYIL 334
           SF+EY T CT +L  S T    PY+L
Sbjct: 181 SFQEYATLCTLMLTYSVTKTAIPYLL 206


>SB_13472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 257 SFREYGTTCTSILMTSRTGMPPPYIL 334
           SF+EY T CT +L  S T    PY+L
Sbjct: 59  SFQEYATLCTLMLTYSVTKTAIPYLL 84


>SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011)
          Length = 337

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 206 RFEKKCMDMTFKNATPKSFREYGTTCTSILMTSRTGMPPPYILVWARCGTRCYF 367
           R+ K+ MD    N   K FR + T   S    SR G+P   IL  A     C F
Sbjct: 284 RWLKQVMDKAGINT--KEFRPHSTRAASTSAASRQGIPLETILAAAGWSNECTF 335


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 457 GVQCAGSQLYFHHVPH*VLQRNCLRVLGRQ--KVASRAAPCPY 335
           G Q   +Q+Y HHV   +L+RN    LG+Q  K+A+     PY
Sbjct: 371 GAQGMKTQVYLHHVLRQLLRRN----LGQQALKIANTCTDLPY 409


>SB_5696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 459 PQVSTETGPRLQVSRNDDCHMGISSLSARA 548
           P+   ETGP L+   N DCHM  + LSA +
Sbjct: 117 PRSPEETGPLLEPMPNADCHM--AKLSANS 144


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 459 PQVSTETGPRLQVSRNDDCHMGISSLSARA 548
           P+   ETGP L+   N DCHM  + LSA +
Sbjct: 172 PRSPEETGPLLEPMPNADCHM--AKLSANS 199


>SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1116

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 257 SFREYGTTCTSILMTSRTGMPPPYIL 334
           SF+EY T CT +L  S T    PY+L
Sbjct: 59  SFQEYATLCTLMLTYSVTKTAIPYML 84


>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1226

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 251 PKSFREYGTTCTSILMTSRTGMPPPYILVWARCG 352
           PK   + G T T  L  S TG+PPP I  W + G
Sbjct: 382 PKGLLDIGATLT--LQCSATGVPPPRI-TWLKNG 412


>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -2

Query: 271 ILSERFRRRIFKRHVHTLFFEPHVPRVIDPPWLPYHFIDFEIRIFL*SLTYSIVFLETFR 92
           I ++  R  I+ +H+    ++ H+   I    +  H  D  IR+ + + TY  V+  T  
Sbjct: 90  IYNKHIRVHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYDKHIRVHIYNNTY--VYTSTIN 147

Query: 91  FY 86
            Y
Sbjct: 148 TY 149


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +2

Query: 230 MTFKNATPKSFREYGTTCTSILMTSRTGMPPPYILVWARCGT--RCYFLPTKDPQAVSLE 403
           M   N  P S  +Y  T    + T+R   P PY  V A CG     +  P   PQ     
Sbjct: 642 MAGNNQPPTSTMQYQETTRQQMGTTRAYPPHPYAQVPAPCGNVQPQHGHPGMYPQHPQGS 701

Query: 404 YLMWHV 421
           Y  +HV
Sbjct: 702 YPQYHV 707


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,385,533
Number of Sequences: 59808
Number of extensions: 442819
Number of successful extensions: 993
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)