Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0340
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical ...    30   0.95 
U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium chann...    30   1.3  
U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium chann...    30   1.3  
AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassi...    30   1.3  
U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like nucl...    28   5.1  
AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z69384-8|CAM06585.1|  495|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z69384-7|CAA93417.2|  502|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like nucl...    27   8.9  
AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF016449-7|AAG24000.2|  350|Caenorhabditis elegans Hypothetical
           protein C50H11.13 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +2

Query: 185 IYYTWNMRFEKKCMDMTF--KNATPKSFREYGTTCTSILMTSRTGMPPPYILVWARCGTR 358
           IY+TW   F ++C ++ F  +  T  SF+  G  C+ ++ +    +  P  +   R    
Sbjct: 119 IYWTWVAMFAERCCNIFFPLRFRTSSSFKTAGVLCSILIFSMSIQLWTPIFITEKRLDNH 178

Query: 359 C-YFLPTKDPQ 388
             Y    +DP+
Sbjct: 179 MDYIYCGEDPR 189


>U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform a protein.
          Length = 692

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 262 QRVWNDMHEYLDDQPNWNAATLHLSM 339
           +R+ N MH +L+    W AAT HL++
Sbjct: 83  RRMQNKMHNFLERPRGWKAATYHLAV 108


>U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform b protein.
          Length = 740

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 262 QRVWNDMHEYLDDQPNWNAATLHLSM 339
           +R+ N MH +L+    W AAT HL++
Sbjct: 131 RRMQNKMHNFLERPRGWKAATYHLAV 156


>AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassium
           channel protein.
          Length = 692

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 262 QRVWNDMHEYLDDQPNWNAATLHLSM 339
           +R+ N MH +L+    W AAT HL++
Sbjct: 83  RRMQNKMHNFLERPRGWKAATYHLAV 108


>U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical
           protein C18A3.2 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 236 TSCPYTFFRTSCSTCNRSSMASL 168
           TS PYTF RT C   +++S++ L
Sbjct: 22  TSIPYTFLRTCCVNASKTSISFL 44


>AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical
           protein F09G2.8b protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 406 PNVARDGSITVNRHTVPLLKFQLKLVHGSKFLVMTT 513
           P+VAR  SI +NR  + L  FQ  L   S  + MTT
Sbjct: 18  PSVARLESIVLNRRELLLDHFQYSLFQNSSEIPMTT 53


>AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 186 ILHGFPITSSISKYGSSCKV*HILLFFW 103
           + HGF + + I  Y  +  + ++ LFFW
Sbjct: 58  VYHGFLVAAGIHNYQKAAPLIYVTLFFW 85


>AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical
           protein F27E11.2b protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 186 ILHGFPITSSISKYGSSCKV*HILLFFW 103
           + HGF + + I  Y  +  + ++ LFFW
Sbjct: 58  VYHGFLVAAGIHNYQKAAPLIYVTLFFW 85


>AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical
           protein F27E11.2a protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 186 ILHGFPITSSISKYGSSCKV*HILLFFW 103
           + HGF + + I  Y  +  + ++ LFFW
Sbjct: 58  VYHGFLVAAGIHNYQKAAPLIYVTLFFW 85


>Z69384-8|CAM06585.1|  495|Caenorhabditis elegans Hypothetical
           protein T11G6.2b protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 111 FFWKLSGFILGIDWPPTTSI 52
           F W L+GFI  + WP   SI
Sbjct: 144 FLWILNGFIQSVGWPVEVSI 163


>Z69384-7|CAA93417.2|  502|Caenorhabditis elegans Hypothetical
           protein T11G6.2a protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 111 FFWKLSGFILGIDWPPTTSI 52
           F W L+GFI  + WP   SI
Sbjct: 151 FLWILNGFIQSVGWPVEVSI 170


>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
           protein D2085.5b protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = +1

Query: 208 VRKKVYGHDV*KCDA*IVQRVWNDMHEYLDDQPNWNAATLHL 333
           + ++++G ++   D+ + ++ + D+HE +D  P     T H+
Sbjct: 635 INERIFGSEIVLLDSSMSEKFYRDLHETVDCAPARTQLTAHI 676


>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
           protein D2085.5a protein.
          Length = 1048

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = +1

Query: 208 VRKKVYGHDV*KCDA*IVQRVWNDMHEYLDDQPNWNAATLHL 333
           + ++++G ++   D+ + ++ + D+HE +D  P     T H+
Sbjct: 676 INERIFGSEIVLLDSSMSEKFYRDLHETVDCAPARTQLTAHI 717


>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
           protein D2085.5b protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = +1

Query: 208 VRKKVYGHDV*KCDA*IVQRVWNDMHEYLDDQPNWNAATLHL 333
           + ++++G ++   D+ + ++ + D+HE +D  P     T H+
Sbjct: 635 INERIFGSEIVLLDSSMSEKFYRDLHETVDCAPARTQLTAHI 676


>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
           protein D2085.5a protein.
          Length = 1048

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = +1

Query: 208 VRKKVYGHDV*KCDA*IVQRVWNDMHEYLDDQPNWNAATLHL 333
           + ++++G ++   D+ + ++ + D+HE +D  P     T H+
Sbjct: 676 INERIFGSEIVLLDSSMSEKFYRDLHETVDCAPARTQLTAHI 717


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 101 FQKNNRIC-QTLQEDPYFEIDEVIGKPWRIYYTWNM 205
           +  N +I   T  ++P+ +I ++   PW   YTW++
Sbjct: 553 YNNNQKIGGSTFSQEPFLDISDLTATPWN--YTWSI 586


>AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 186 ILHGFPITSSISKYGSSCKV*HILLFFWK--LSGFILG 79
           + HG+ I + I  Y  +  + ++ LFFW   +  FI+G
Sbjct: 52  VYHGYLIAAGIHNYQKASPLIYVTLFFWLCFVINFIVG 89


>AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical
           protein F27E11.1 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 186 ILHGFPITSSISKYGSSCKV*HILLFFWK--LSGFILG 79
           + HG+ I + I  Y  +  + ++ LFFW   +  FI+G
Sbjct: 52  VYHGYLIAAGIHNYQKASPLIYVTLFFWLCFVINFIVG 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,308,248
Number of Sequences: 27780
Number of extensions: 328920
Number of successful extensions: 861
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)