Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0340
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06210.1 68415.m00684 phosphoprotein-related low similarity t...    29   2.0  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    28   3.6  
At4g25280.1 68417.m03636 adenylate kinase family protein contain...    28   4.7  
At2g28220.1 68415.m03426 aspartyl protease family protein contai...    28   4.7  
At1g72750.1 68414.m08412 mitochondrial import inner membrane tra...    27   6.2  
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-...    27   8.3  

>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 1064

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -3

Query: 546 LWLIMTRFPCGSRHYEKLGAVDQFQLKLEEGYSVPVHSYTSITCHIRYSRETACGS 379
           LWLI+      +R Y K G ++QF+  LEEG S  +  Y +   + R +   A G+
Sbjct: 42  LWLII------AREYFKQGKIEQFRQILEEGSSSDIDEYYADVKYERIAILNALGA 91


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 510  RHYEKLGAVDQFQLKLEEGYSVPVHSYTSITCHIRYSRETAC 385
            R YEK+G    +  +L++GY +       I   I +S E  C
Sbjct: 1310 RQYEKMGIGSSYLFRLDDGYVLDATKRGGIARFINHSCEPNC 1351


>At4g25280.1 68417.m03636 adenylate kinase family protein contains
           Pfam profile: PF00406 adenylate kinase
          Length = 249

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 328 HLSMGKV-RHEMLLFADQGPAGSFSGVPNVARDGSITVNRHTVPLLKFQLKLVHGSKFLV 504
           HLS G + R E+ +  + G       + N+ +DG I  +  TV L++ +L+     KFL+
Sbjct: 71  HLSAGDLLRREIAMHTENGAM-----ILNLIKDGKIVPSEVTVKLIQKELESSDNRKFLI 125


>At2g28220.1 68415.m03426 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 756

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -1

Query: 236 TSCPYTFFRTSCSTCNRSSMASLSLHRFRNTDLPVKSDIFYCFSG 102
           T+  Y+ F +S S     +M  LSL      DLP    I YCFSG
Sbjct: 526 TNLQYSGFASSSSGIVGLNMGPLSL--ISQMDLPYPGLISYCFSG 568


>At1g72750.1 68414.m08412 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains Pfam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 188

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/59 (35%), Positives = 24/59 (40%)
 Frame = -1

Query: 512 VVITRNLEPWTSFS*NLRRGTVCRFTVILPSRATLGTPEKLPAGPWSAKSSISCRTLPI 336
           V  T   + WTS    L  G VCR    + S A  G    L AG   A   I  R +PI
Sbjct: 130 VAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVPI 188


>At2g29080.1 68415.m03535 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 809

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 510 RHYEKLGAVDQFQLKLE---EGYSVPVHSYTSIT 418
           ++Y  +G+VD F+ KLE   E   V  H Y  +T
Sbjct: 219 KYYFNIGSVDSFEEKLEEAQEALGVDRHEYVPVT 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,479,368
Number of Sequences: 28952
Number of extensions: 306943
Number of successful extensions: 765
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)