Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0339
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    30   0.22 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.90 
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.1  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   4.8  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   4.8  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   6.3  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    25   6.3  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.3  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 46  DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPG 165
           +K+  VV EK   P  + T     E  PSE Y+  EPPPG
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPG 301


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 85  PDSMATITMKPEYPPSEVYSTSEPPPGLS 171
           P   +T  + P  PP+   STS PPP  S
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPPPAS 321



 Score = 28.3 bits (60), Expect = 0.90
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 85  PDSMATITMKPEYPPSEVYSTSEPPPGLS 171
           P   +T  + P  PP+   STS PPP  S
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPPPAS 375


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 73  KEHQPDSMATITMKPEYPPSEVYSTS 150
           + +  DS +TI  +PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 152 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 63
           S V    +G Y+GFIV++A+ S    F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 109 MKPEYPPSEVYSTSEPPPGLS 171
           + P YP S VY   E PP +S
Sbjct: 488 ISPYYPTSSVYGVYESPPHMS 508


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 332 VLCRALHPAALADGMMNELLPNSKPIKGSQDEG 234
           VL RAL    + DG  N  LPN   +K S  +G
Sbjct: 39  VLIRALKRFGILDGFPNTRLPNEMILKLSSVQG 71


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 132 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 34
           RRRIFR H      +W+  FF   L++  +IY+
Sbjct: 32  RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 235 EEATTVSAAIFAIWTEVDTLCPIS-PVAVLMCC 140
           EE   +S  +F+ W E++T  P+S P+  L  C
Sbjct: 36  EEDRLISTNLFSPWAELNTKKPVSQPMFKLPAC 68


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 82  QPDSMATITMKPEYPPSEVYSTSEPP 159
           QP + +T+   P  PPS  Y+T++PP
Sbjct: 86  QPGNASTMYASP--PPSSNYNTAKPP 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,821
Number of Sequences: 5004
Number of extensions: 43414
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)