Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0339
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0692 + 5179778-5181847                                           29   3.7  
12_02_1197 + 26915933-26916298                                         28   4.9  
03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421           28   4.9  
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497...    28   4.9  
04_04_0270 - 24061852-24063264                                         28   6.5  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    27   8.6  

>02_01_0692 + 5179778-5181847
          Length = 689

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 61  VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPGLSGTG 180
           V ++    PD +A     P  PP+     ++PPPG SG+G
Sbjct: 247 VPLKNAPTPDMLAPPAQAPP-PPAPAPPRAQPPPGGSGSG 285


>12_02_1197 + 26915933-26916298
          Length = 121

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 158 GGSDVLYTSEGGYSGFIVIVAIESGW 81
           GG DVL  + GG    +++VA ES W
Sbjct: 3   GGEDVLVVAPGGGRDALLLVAQESAW 28


>03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421
          Length = 927

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -3

Query: 317 LHPAALAD-GMMNELLPNSKPIKGSQDEG--GSDHC*CCNLRDLDRS*HPVPDKPGGGSD 147
           LH   LAD G M E   +S   +  +D G   +  C CC    +  S   +PDK  G S+
Sbjct: 105 LHHGRLADAGDMCEACLSSSKEESIKDAGEESATVCSCC-YAVVKTSSRELPDKGQGQSE 163

Query: 146 VLYTSEGGYSGFIVIVAIESG 84
              T E    G++ +   E G
Sbjct: 164 EKTTEEDRNQGYVPLAQEEHG 184


>02_05_1006 +
           33448476-33448915,33449016-33449083,33449681-33449751,
           33449905-33450156,33450473-33450636,33450731-33450773,
           33451044-33451161,33451384-33451481,33451550-33451594
          Length = 432

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 102 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 22
           C H+ WL +  HH++ ILF+K  L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430


>04_04_0270 - 24061852-24063264
          Length = 470

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 250 VPKMKEEATTVSAAIFAIWTEVDTLCPISPVA 155
           +P + +   ++SA++ A +  V TLCP+S  A
Sbjct: 65  LPSLSDVTGSMSASLAASFAHVTTLCPLSTAA 96


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 79  HQPDSMA-TITMKPEYPPSEVYSTSEPPPGLSGT 177
           H+ D+ A T T+    PPSE  +   PPP  + T
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATAT 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,398,610
Number of Sequences: 37544
Number of extensions: 344915
Number of successful extensions: 880
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)