Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0339
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6700| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_3921| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_27955| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_15662| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   27   8.7  

>SB_6700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 91  SMATITMKPEYPPSEVYSTSEPPPGLSGTGC 183
           ++  I++KP YPP+ +  T+ P P ++   C
Sbjct: 127 NLRDISLKPSYPPTALPPTNLPVPSVAEKNC 157


>SB_3921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 386 RLIRXQGIISVGSALPKRVLCRALHPAALADGMMNELLPNS 264
           R+ R  G+IS   A+ + V+ RAL  +     ++NEL+ N+
Sbjct: 130 RVTRWGGMISTPDAVLQAVIRRALADSGCPSNILNELMENA 170


>SB_27955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 103 ITMKPEYPPSEVYSTSEPPPGLSGT 177
           +T+KP   P++ Y  S P P L G+
Sbjct: 368 VTLKPAQGPAQFYQPSPPHPSLQGS 392


>SB_15662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -3

Query: 251 GSQDEGGSDHC*CCNLRDLDRS*HPVPDKPGGGSDVLYTSEGGYSGFIVIVAIESGWCSF 72
           G  D+ GSD    C   D D S   +    GG  D     + G S  I+I  ++ GWC +
Sbjct: 7   GDDDDDGSDVMIICGCDDDDGS-DSMMICDGGDDDDDDDDDDG-SDVIMICDVDDGWCCY 64


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 380 IRXQGIISVGSALPKRVLCRALHPAALADGMMNELLPNSKPIKGSQDE 237
           I  Q I  +G ALP+ +    ++P+A A+   N  L   KP + ++ E
Sbjct: 127 IAKQLIFGMGGALPQELSSLLINPSATANKPKNSKLKAKKPPQKAKGE 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,006,136
Number of Sequences: 59808
Number of extensions: 359990
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)