Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0339
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11620.1 68415.m01249 hypothetical protein                          30   1.3  
At3g49210.1 68416.m05378 expressed protein                             29   2.4  
At5g57040.1 68418.m07120 lactoylglutathione lyase family protein...    28   4.1  
At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /...    28   5.4  
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    27   7.2  
At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf...    27   9.5  
At3g52760.1 68416.m05813 integral membrane Yip1 family protein c...    27   9.5  
At3g45800.1 68416.m04957 hypothetical protein                          27   9.5  
At2g24240.1 68415.m02895 potassium channel tetramerisation domai...    27   9.5  

>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 64  VMEKEHQPDSMATITMKPEYPPSEVYSTSEPPP 162
           V+  +   + M  + MKPE PP ++Y   +P P
Sbjct: 253 VLRYDGNNNGMQGVLMKPEKPPQDLYGQCQPQP 285


>At3g49210.1 68416.m05378 expressed protein
          Length = 518

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = +3

Query: 138 IQHIRTATGLIGHRVSTSVQIAKIAALTVVASSFILGTFYWLRVG*QLVHHAIS 299
           +QH+R A  +I  R   S++    AALT VA  FIL TF  ++V  ++++ A+S
Sbjct: 382 LQHLRRAKRIID-RKKNSLE----AALTFVAGKFILKTF-GVQVAAKIINRALS 429


>At5g57040.1 68418.m07120 lactoylglutathione lyase family protein /
           glyoxalase I family protein contains Pfam PF00903:
           glyoxalase family protein
          Length = 197

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 275 LPNSKPIKGSQDEGGSDHC*CCNLRDLDRS*HPVPDKPG 159
           LPN  P+ G  + GG D   C  +RD+      + DK G
Sbjct: 132 LPNPDPLTGRPEHGGRDRHACIAIRDVSNL-KEILDKAG 169


>At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
           [Glycine max]; contains PF00295: Glycosyl hydrolases
           family 28 (polygalacturonases)
          Length = 475

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 115 PEYPPSEVYSTSEPPPGLSGTGC 183
           P+  PS+ Y + +P PG S +GC
Sbjct: 56  PDQVPSDPYPSPDPAPGDSDSGC 78


>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 64  VMEKEHQPDSMA--TITMKPEYPPSEVYSTSEPPP 162
           + E+E +P  +   T  +KP  PP +  +T  PPP
Sbjct: 222 IEEEESEPKEIQIDTFVVKPSSPPQQPPATPPPPP 256


>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 404

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 73  KEHQPDSMATITMKPEYPPSEVYSTSEPPPGLSGTG 180
           +++ PD    +T+ P    S V  TSE PP   G G
Sbjct: 93  RKYNPDGTLVVTLSPMPISSSVPLTSEFPPRKRGRG 128


>At3g52760.1 68416.m05813 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 257

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 238 SSWEPFIGFELGSSSFIMPSARAAGCNARQRTRFGR 345
           SS  PFI FE+GS++  MP+    G  A   + FGR
Sbjct: 43  SSSIPFIPFEIGSAAVSMPAGPFDGTIASSAS-FGR 77


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 109 MKPEYPPSEVYSTSEPPP 162
           MKPE PP ++Y   +P P
Sbjct: 458 MKPEKPPQDLYGQCQPQP 475


>At2g24240.1 68415.m02895 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 441

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 113 SRNIRLLKYTAHQNRHRAYRAQGVNFGPDREDCSTNSGR 229
           S ++R      H+N+ ++Y A  ++F PD E  ++  GR
Sbjct: 195 SGDLRYKFQVCHENQVKSYTAGALSFSPDYEIFASCKGR 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,635,762
Number of Sequences: 28952
Number of extensions: 254186
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)