Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0336
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 52 6e-08
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 46 2e-06
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 29 0.39
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 28 0.68
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.3
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom... 25 8.4
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 8.4
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 25 8.4
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 25 8.4
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 8.4
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 51.6 bits (118), Expect = 6e-08
Identities = 30/79 (37%), Positives = 44/79 (55%)
Frame = +2
Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGXDRDAQMVCGGAEAQTRQALDNLRH 418
S K I SP++ GPY+QAI A+ +Y SG + + +++ G QTRQ L NL+
Sbjct: 37 STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94
Query: 419 VLEAGGASXESVVKTTVLL 475
VL G+S +VK + L
Sbjct: 95 VLTEAGSSLNKIVKVNIFL 113
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 46.4 bits (105), Expect = 2e-06
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +2
Query: 284 GPYSQAILADKTLYISGILGXDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASXESVVKT 463
GPY+QA+ + ++ SG +D V G + QTR ++NL VL G+S E +VK
Sbjct: 15 GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73
Query: 464 TVLL 475
+ L
Sbjct: 74 NIFL 77
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 29.1 bits (62), Expect = 0.39
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILG 343
+GPYSQ+I A+ ++ISG +G
Sbjct: 421 IGPYSQSICANGVVFISGQIG 441
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 0.68
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 368 CGGAEAQTRQALDNLRHVLEAGGASXESVVK 460
C G + T++ +D LR ++AGG E +K
Sbjct: 88 CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 332 QKCIRSCPLKLLDCTDLLVDIFPEML-YCFCYFIVIRIF 219
+K +RSC K+L T L D+F + Y F +R F
Sbjct: 1223 EKLVRSCLSKILGNTVLSADVFENLQNYGFDSLCAMRFF 1261
>SPBC19C2.02 |pmt1||DNA methyltransferase
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 384 ASAPPQTICASRSNPRIPEMYKVLSAKIA 298
A+ P +CA NP+ E+Y + K+A
Sbjct: 26 ANIPADIVCAIDINPQANEIYNLNHGKLA 54
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 280 SRSVQSSNF--SGQDLIHFWNSRIXSRC 357
S+ +Q F SGQD++ FW +R+ C
Sbjct: 504 SKDIQPLPFIESGQDILFFWIARMALLC 531
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 191 VFGRQCRIF*AHFYSLDVNRSIVQMTKR 108
+FG+Q AH+YSL+VN ++ +
Sbjct: 111 LFGKQLTDPSAHYYSLEVNPKFAKIASK 138
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 149 SLDVNRSIVQMTKR*HYRCSDSKSMEYLHKCYFIIIIP 36
SLDV ++++ T RC++ + Y K + I IP
Sbjct: 56 SLDVQKNMITQTSLYVLRCNNISTFPYATKIHVINPIP 93
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 24.6 bits (51), Expect = 8.4
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Frame = +2
Query: 59 IYVGIPYSYYLNTDSVIFLSFELLTYLHL---KNKNELRRF---CTG------VRRQSFA 202
I +G PYS ++T SV +EL T L + N++ R+ C G ++R F
Sbjct: 331 IILGFPYSCPIDTWSVGCSLYELYTGQILFPGRTNNQMLRYMMECKGKFSHKMLKRSQFL 390
Query: 203 QNEFSKKFE*Q*SNKNNITSPEIYQPV 283
+ F F + + IT+ E +PV
Sbjct: 391 NDHFDADFNFIQIDHDPITNQETRKPV 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,685
Number of Sequences: 5004
Number of extensions: 36584
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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