Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0336
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102...    45   4e-05
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    43   2e-04
07_01_0548 - 4061829-4062956                                           29   2.1  
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281...    29   2.1  
12_01_0112 - 860330-861946                                             28   3.6  
05_05_0167 - 22868506-22868580,22868693-22869103                       28   3.6  
02_05_0442 - 29044736-29046604                                         27   6.3  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    27   8.4  

>07_03_0593 +
           19808148-19808310,19809416-19809531,19810129-19810202,
           19810286-19810335,19810498-19810592
          Length = 165

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 25/65 (38%), Positives = 39/65 (60%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGXDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASXESVVK 460
           +GPYSQAI A+  +++SG+LG +               + + N+  +L+A GAS  SVVK
Sbjct: 69  LGPYSQAIKANNMVFVSGVLGLN--------------PEVMKNMGEILKASGASYSSVVK 114

Query: 461 TTVLL 475
           TT++L
Sbjct: 115 TTIML 119


>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
            34664499-34664647,34664784-34664879,34665406-34665476,
            34665637-34665698,34665778-34665841,34665950-34666034,
            34666129-34666255,34666381-34666454,34666539-34666599,
            34666683-34666771,34666897-34667206,34667763-34667815,
            34668299-34668370,34668648-34668914,34669015-34669047,
            34669163-34669245,34669522-34669594,34669834-34670170,
            34670302-34670633,34670816-34671135,34671261-34671612,
            34671691-34671906
          Length = 1170

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 281  VGPYSQAILADKTLYISGILGXDRDAQMVC-GGAEAQTRQALDNLRHVLEAGGAS 442
            +GPYSQA L  + LY++G LG D     +C GG  A+   AL N   V  A G S
Sbjct: 870  IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRNSEAVANAFGCS 924


>07_01_0548 - 4061829-4062956
          Length = 375

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 456 TTDSNEAPPASSTCRRLSRA*RVCASAPPQTICASRSNPRIPEMYKVLSA 307
           TT +     A+     LS A ++C++ PP     + +NPR+   Y  L A
Sbjct: 5   TTTTTLPAAAALLLLLLSAAAQLCSACPPAASQTAENNPRLQRAYVALQA 54


>03_06_0110 -
           31727376-31727381,31727554-31727664,31728071-31728133,
           31729202-31729331,31729532-31729701,31729800-31729859,
           31729941-31730018,31730108-31730197,31730275-31731118,
           31731220-31731281,31731362-31731423,31731511-31731700
          Length = 621

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 438 APPASSTCRRLSRA*RVCASAPPQTICASRSNPR 337
           APP S  C ++ +    C   P + +C S SNP+
Sbjct: 226 APPLSEVCSKMRKLNLACREVPSRYLCQS-SNPK 258


>12_01_0112 - 860330-861946
          Length = 538

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 347 DRDAQMVCGGAEAQTRQALDNLRHVLEAGGASXESVVKT 463
           +RD+    GGA  ++R+A  +    L+ GG + ++V KT
Sbjct: 285 ERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKT 323


>05_05_0167 - 22868506-22868580,22868693-22869103
          Length = 161

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 497 GSRSMPSPTKQ*FSRPTXTKRHQLQVHVXDCPEPDG 390
           G++   SP  + +  P  T+   L VH  D P+PDG
Sbjct: 30  GAKKDISPPVEWYGVPDGTRSLALVVHDVDAPDPDG 65


>02_05_0442 - 29044736-29046604
          Length = 622

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 471 KTVVFTTDSNEAPPASSTCRRLSRA*RVCASAPPQTIC 358
           +TV+ TT+   AP  S   RR + A    A++ P T C
Sbjct: 71  RTVIATTNGRAAPSQSRPRRRPAPAAAASAASLPMTFC 108


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 438 APPASSTCRRLSRA*RVCASAPPQTICASRSNPR 337
           APPAS++ + ++R     +S  P T+  S+ +PR
Sbjct: 201 APPASNSLKDMARTAPSASSKAPSTLQKSKLSPR 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,214
Number of Sequences: 37544
Number of extensions: 224328
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)