Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0336
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)                     29   2.1  
SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)           29   2.8  
SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
          Length = 474

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -2

Query: 437 RHQLQVHVXDCPEPDGSALQHHRRPSVHLDXIREFQKCIRSCPLKLLDCTDLLV 276
           +H+L VH+  C   DGSA +  RR   H +  R     +R   ++LLD T +L+
Sbjct: 281 KHRLMVHLWRCAVRDGSA-EAIRRFFQHFEQFR----MLRMWKMQLLDETTILI 329


>SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)
          Length = 363

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 243 LLYCYSNFLLNSF--WAKLCLRTPVQNLLS 160
           LL  +S +  NSF  W+ LC  +P+ +LLS
Sbjct: 90  LLIIHSYYTFNSFVAWSSLCTLSPISDLLS 119


>SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 386 ALQHHRRPSVHLDXIREFQKCIRSCPLKLLDCTDLLVDIFPEML 255
           A +  R  +  L  + E +KC++S    L   T+ LVD  P+ML
Sbjct: 122 ACEMTREGTPALSLLDEMKKCLQSAEQLLEQDTETLVDQAPDML 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,960
Number of Sequences: 59808
Number of extensions: 258418
Number of successful extensions: 708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)