Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0336
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 280 SRSVQSSNFSGQDLIHFWN 336
           S  ++S + + QDL+  WN
Sbjct: 147 SMMIESLSHTTQDLVFIWN 165


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 245 KNNITSPEIYQPVGPYSQAILADKTLYISGILGXDRDAQM 364
           KN++T+ +  Q  G         KT  I  +LG  + AQM
Sbjct: 48  KNSLTTHKSLQHRGSSGMLKRLLKTTAIKNVLGSMQHAQM 87


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 56  NIYVGIPYSYYLNTDSVIFLSFELLTYLHLKNKNELRRFCT 178
           NI   +P +    TDS I   FELL    + N+  L    T
Sbjct: 529 NIMSKLPKTVRTPTDSYIRSFFELLQNPKVSNEQFLNTAAT 569


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 131 TYLHLKNKNELRRFCTGVRRQSFAQNEFSKKFE*Q*SNKNNITSPEIYQPVGPYSQAILA 310
           TY++  NK  L    + ++  S  +   SKK +   S + + T  +     GP S    A
Sbjct: 548 TYINSGNKISLATSKSFIKANSQTEVSNSKKLDRLDSLRGSTTDSQTEDNFGPLSNVRFA 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,659
Number of Sequences: 438
Number of extensions: 2545
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)