Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0336
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c...    61   4e-10
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    38   0.004
At4g04920.1 68417.m00715 expressed protein                             28   4.0  

>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
           contains Pfam domain PF01042: Endoribonuclease L-PSP
          Length = 187

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +2

Query: 245 KNNITSPEIYQPVGPYSQAILADKTLYISGILGX-DRDAQMVCGGAEAQTRQALDNLRHV 421
           K  +++ +    +GPYSQAI A+  +++SG+LG      + V    E QT Q L N+  +
Sbjct: 64  KEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEI 123

Query: 422 LEAGGASXESVVKTTVLL 475
           L+A GA   SVVKTT++L
Sbjct: 124 LKASGADYSSVVKTTIML 141


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGXDRDA-QMVCGGAEAQTRQALDNLRHVLEAGGASXES 451
           +GPYSQA L    L+++G LG D     +   GA A+  QAL N   + E+   S  S
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISS 482


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYIS 331
           SN+NN+TSP       P +  +  DK+LY++
Sbjct: 844 SNRNNVTSP-TQNASSPATPQVFPDKSLYLA 873


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,728,535
Number of Sequences: 28952
Number of extensions: 184389
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)