Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0334
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l...    28   1.7  
At5g57030.1 68418.m07118 lycopene epsilon cyclase identical to l...    28   2.2  
At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia l...    26   6.8  

>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 556

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 206 PHIFL*RSKQRLIFKSTKXSLQRFCKIGMNGFFSLFYVLPSWATHLFL 349
           PH    RS Q L+ +STK  L +FC +      ++  V   W   L L
Sbjct: 211 PHFLACRSAQPLL-ESTKAKLSQFCHVAAANILNIHDVPNIWHVPLLL 257


>At5g57030.1 68418.m07118 lycopene epsilon cyclase identical to
           lycopene epsilon cyclase [GI:1399181]
          Length = 524

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 RSKQRLIFKSTKXSLQRFCKIGMNGFFSLFYVLPSWATHLFL 349
           R +QR  F      + +F   G+  FF  F+ LP W    FL
Sbjct: 435 RKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFL 476


>At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 597

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 206 PHIFL*RSKQRLIFKSTKXSLQRFCKIGMNGFFSLFYVLPSWATHLFL 349
           P+I   RS + L  ++ K  L RFC + +   FSL  V   W   L L
Sbjct: 211 PNIIACRSTKALE-ENVKAKLSRFCYVPIQNIFSLCDVPNIWHIPLLL 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,141,741
Number of Sequences: 28952
Number of extensions: 61207
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)