Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0333
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           31   0.51 
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    28   3.6  

>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 127 SSCSTCKW*CTESRGRSMGRSKNRRSS 207
           +SC  CK  C  S GRS  R++ RRSS
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERRSS 278


>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 374 SLFCHL*INKSKLIIQ--STLIHNATYGPSPVKQSGST 481
           +LFCH  I KSKL  Q  S    N+T GPS      ST
Sbjct: 758 ALFCHCGIEKSKLWQQQKSANFRNSTPGPSNQSSDVST 795


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,474,691
Number of Sequences: 37544
Number of extensions: 128194
Number of successful extensions: 230
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)