Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0331
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 86 4e-18
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 85 7e-18
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 28 0.81
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 5.7
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.5
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 7.5
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 25 10.0
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 85.8 bits (203), Expect = 4e-18
Identities = 40/66 (60%), Positives = 48/66 (72%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAPGVTVVNSPKQKD 437
GVT+GF+YKMR VYAHFPIN TE +++ IRNFLGE+ +K PGVTV S KD
Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140
Query: 438 ELIIEG 455
E+IIEG
Sbjct: 141 EIIIEG 146
Score = 64.9 bits (151), Expect = 8e-12
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +1
Query: 22 KQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMVNPRLLKVEKWFGS 201
+ I ++ IP V+V +K+RLVTVKGPRGVLK+N + + +++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61
Query: 202 KKELAAVRTVCSHVENMI 255
+K A +RT S + NMI
Sbjct: 62 RKHNACIRTAYSIINNMI 79
Score = 45.6 bits (103), Expect = 5e-06
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 455 HSLEDVSSSAALIQESTTVKNKDIRKFXDGLYV 553
+SLE+VS SAA I++ V+NKDIRKF DG+YV
Sbjct: 147 NSLENVSQSAANIKQICNVRNKDIRKFLDGIYV 179
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 85.0 bits (201), Expect = 7e-18
Identities = 39/66 (59%), Positives = 48/66 (72%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAPGVTVVNSPKQKD 437
GVT+GF+YKMR VYAHFPIN TE +++ IRNFLGE+ +K PGVTV S KD
Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140
Query: 438 ELIIEG 455
E+I+EG
Sbjct: 141 EIILEG 146
Score = 62.5 bits (145), Expect = 4e-11
Identities = 31/78 (39%), Positives = 47/78 (60%)
Frame = +1
Query: 22 KQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMVNPRLLKVEKWFGS 201
+ I ++ IP VTV +K+R VTV GPRG LK+N +H+ +++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 202 KKELAAVRTVCSHVENMI 255
+K A +R+V S + NMI
Sbjct: 62 RKHNACIRSVYSIINNMI 79
Score = 45.6 bits (103), Expect = 5e-06
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 455 HSLEDVSSSAALIQESTTVKNKDIRKFXDGLYV 553
+SLE+VS SAA I++ V+NKDIRKF DG+YV
Sbjct: 147 NSLENVSQSAANIKQICNVRNKDIRKFLDGIYV 179
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 28.3 bits (60), Expect = 0.81
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 455 HSLEDVSSSAALIQESTTVKNKDIRKFXDGLYV 553
H + D+S+SA + T + N+++ K +GL++
Sbjct: 76 HFMSDISNSACRASKITALNNRELYKDDNGLFI 108
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = -2
Query: 478 ARDIFQRVPSMISSSFCXGELTTVTPGAIFTLXMYFSPKKLRIXIIELPSVVTQLMG 308
A I+QR P+ + C G + +TPG L S + + + ++ +L G
Sbjct: 510 AEMIYQRFPNSVLFLACHGSESCITPGTYALLGAAASLSGIMHLTVTIVVIMFELTG 566
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 215 ASSFLDPNHFSTFRRRGFTMRMSXAKC-LKFLLRTPRG 105
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/44 (20%), Positives = 20/44 (45%)
Frame = -3
Query: 186 LNLQETRVYHANVXSQVFEVPFENSAGPFNCHQTRFHXDRNPVW 55
L+ Q +++ + + ++ N F+CH+ F + VW
Sbjct: 259 LHNQYIYIWNKETYAMIQQIGISNIYSTFSCHKNTFFTSNSYVW 302
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 226 TVCSHVENMIKE*LKASNTRCVL 294
T CS+VEN IKE + C+L
Sbjct: 437 TFCSNVENDIKEIFEVCKDYCML 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,987
Number of Sequences: 5004
Number of extensions: 41066
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -