Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0331
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044     90   1e-18
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...    90   1e-18
12_02_0154 + 14494319-14495857                                         29   3.3  
03_01_0326 + 2535800-2535938,2536891-2536959,2537310-2537375,253...    27   7.7  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAPGVTVVNSPKQKD 437
           GVTKG++YKMR VYAHFPIN   T  N+ I IRNFLGEK + +V M  GVT++ S K KD
Sbjct: 82  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 141

Query: 438 ELIIEG 455
           EL+++G
Sbjct: 142 ELVLDG 147



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 40/80 (50%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
 Frame = +1

Query: 19  MKQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMV-NPRLLKVEKWF 195
           MK I+A++   IP  VTV V +++VTV+GPRG L RNFKHL  D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 196 GSKKELAAVRTVCSHVENMI 255
           G+++ +AA+RT  SHV+N+I
Sbjct: 61  GTRRTMAAIRTAISHVQNLI 80



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = +2

Query: 455 HSLEDVSSSAALIQESTTVKNKDIRKFXDGLYV 553
           + +E VS SAALI +   VKNKDIRKF DG+YV
Sbjct: 148 NDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 180


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAPGVTVVNSPKQKD 437
           GVTKG++YKMR VYAHFPIN   T  N+ I IRNFLGEK + +V M  GVT++ S K KD
Sbjct: 75  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 134

Query: 438 ELIIEG 455
           EL+++G
Sbjct: 135 ELVLDG 140



 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
 Frame = +1

Query: 52  IPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMV---NPRLLKVEKWFGSKKELAAV 222
           IP  VTV V +++VTV+GPRG L RNFKHL  D +++     R L+V+ WFG+++ +AA+
Sbjct: 3   IPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAI 62

Query: 223 RTVCSHVENMI 255
           RT  SHV+N+I
Sbjct: 63  RTAISHVQNLI 73



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = +2

Query: 455 HSLEDVSSSAALIQESTTVKNKDIRKFXDGLYV 553
           + +E VS SAALI +   VKNKDIRKF DG+YV
Sbjct: 141 NDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 173


>12_02_0154 + 14494319-14495857
          Length = 512

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 106 PRGVLKRNFKHLAXDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKE*LKA 273
           P+ VL+   KH+  D+   +  L ++E+ F +K+ L     V  H +NM++E LK+
Sbjct: 250 PKPVLRP--KHVIGDVGNSDDPLHELEQSFFNKRFLIVFEDVDIHKKNMLEELLKS 303


>03_01_0326 +
           2535800-2535938,2536891-2536959,2537310-2537375,
           2537979-2538100,2538501-2538629,2540462-2540569
          Length = 210

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 516 FLTVVDSWMRAAELETSSKECLQ*LV 439
           F  + D W +  EL +++KEC++ LV
Sbjct: 101 FTNLADVWAKEIELHSTNKECIKMLV 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,978,643
Number of Sequences: 37544
Number of extensions: 264047
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)