BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0331 (557 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 95 5e-20 SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04 SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5 SB_34402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 29 2.6 SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 4.5 SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9 SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 5.9 SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 27 7.9 SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 27 7.9 >SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) Length = 741 Score = 94.7 bits (225), Expect = 5e-20 Identities = 43/80 (53%), Positives = 58/80 (72%) Frame = +1 Query: 19 MKQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMVNPRLLKVEKWFG 198 MK I+A++ IP V V VKSR+VTV GPRG LKRNF+HL ++ V ++V+ WF Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616 Query: 199 SKKELAAVRTVCSHVENMIK 258 S+KELA V+T+ +H+ENMIK Sbjct: 617 SRKELACVKTIITHIENMIK 636 Score = 73.3 bits (172), Expect = 1e-13 Identities = 30/49 (61%), Positives = 38/49 (77%) Frame = +3 Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAP 401 KGV G++YKMRAVYAHFPIN E +++ +RNFLGEKY+ RV+M P Sbjct: 636 KGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684 >SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 34 Score = 42.7 bits (96), Expect = 2e-04 Identities = 19/23 (82%), Positives = 21/23 (91%) Frame = +2 Query: 485 ALIQESTTVKNKDIRKFXDGLYV 553 ALIQ+ST VKNKDIRKF DG+YV Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYV 24 >SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 377 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 338 ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFS 243 +T+ D G VS H+THLV A S +++ F+ Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAYLSFA 204 >SB_34402| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 29.1 bits (62), Expect = 2.6 Identities = 19/60 (31%), Positives = 25/60 (41%) Frame = -1 Query: 353 YXNN*ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFSTCEQTVLTAASSFLDPNHFSTFR 174 Y N+ ++ D GE S +E FSY ++ E T SF PN F FR Sbjct: 47 YGNSYFNIATDFGTGEFLAFSQDWKMETFSYGKVL----ENTFAMCLKSFGSPNTFLNFR 102 >SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) Length = 197 Score = 29.1 bits (62), Expect = 2.6 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 7/44 (15%) Frame = -3 Query: 171 TRVYHANVXSQVFEVP-------FENSAGPFNCHQTRFHXDRNP 61 TR YH NV VF V F S G N HQ + DR P Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100 >SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) Length = 309 Score = 28.3 bits (60), Expect = 4.5 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -2 Query: 457 VPSMISSSFCXGELTTVTPGAIFTLXMYFSPKKLRIXIIE 338 +P I S G+L +T G I T PKKL +IE Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257 >SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 218 Score = 27.9 bits (59), Expect = 5.9 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -3 Query: 180 LQETRVYHANVXSQVFEVPFENSAGPFNCHQ 88 L TR+ + V S EV E S P++CHQ Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190 >SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) Length = 1152 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +1 Query: 76 VKSRLVTVKGPRGVLKRNFKHL 141 V++R TV PRG L+RN +HL Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090 >SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) Length = 428 Score = 27.5 bits (58), Expect = 7.9 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = -1 Query: 302 SIHSTHLVLEAFSYSFIMF--STCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSXAKCLK 129 S+ S HL L Y ++++ + C L +SFL P+H + R GF + A + Sbjct: 185 SVISFHLTLSRKPYYYLLYILTPCSVLCLLTLTSFLIPSH--SGERIGFITTLLLAMTVY 242 Query: 128 FLL 120 LL Sbjct: 243 LLL 245 >SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) Length = 828 Score = 27.5 bits (58), Expect = 7.9 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 7/44 (15%) Frame = -3 Query: 171 TRVYHANVXSQVFEV-------PFENSAGPFNCHQTRFHXDRNP 61 TR YH NV VF V F S G + HQ + DR P Sbjct: 108 TRSYHKNVVKLVFGVNDYWYRYEFAKSRGQIHWHQLSWREDRQP 151 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,407,755 Number of Sequences: 59808 Number of extensions: 310190 Number of successful extensions: 611 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 585 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 611 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1300738331 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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