Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0331
(557 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 95 5e-20
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_34402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 29 2.6
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 4.5
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 5.9
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 27 7.9
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 27 7.9
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 94.7 bits (225), Expect = 5e-20
Identities = 43/80 (53%), Positives = 58/80 (72%)
Frame = +1
Query: 19 MKQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMVNPRLLKVEKWFG 198
MK I+A++ IP V V VKSR+VTV GPRG LKRNF+HL ++ V ++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 199 SKKELAAVRTVCSHVENMIK 258
S+KELA V+T+ +H+ENMIK
Sbjct: 617 SRKELACVKTIITHIENMIK 636
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = +3
Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAP 401
KGV G++YKMRAVYAHFPIN E +++ +RNFLGEKY+ RV+M P
Sbjct: 636 KGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +2
Query: 485 ALIQESTTVKNKDIRKFXDGLYV 553
ALIQ+ST VKNKDIRKF DG+YV
Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYV 24
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 338 ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFS 243
+T+ D G VS H+THLV A S +++ F+
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAYLSFA 204
>SB_34402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 353 YXNN*ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFSTCEQTVLTAASSFLDPNHFSTFR 174
Y N+ ++ D GE S +E FSY ++ E T SF PN F FR
Sbjct: 47 YGNSYFNIATDFGTGEFLAFSQDWKMETFSYGKVL----ENTFAMCLKSFGSPNTFLNFR 102
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = -3
Query: 171 TRVYHANVXSQVFEVP-------FENSAGPFNCHQTRFHXDRNP 61
TR YH NV VF V F S G N HQ + DR P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 457 VPSMISSSFCXGELTTVTPGAIFTLXMYFSPKKLRIXIIE 338
+P I S G+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 180 LQETRVYHANVXSQVFEVPFENSAGPFNCHQ 88
L TR+ + V S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 76 VKSRLVTVKGPRGVLKRNFKHL 141
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 302 SIHSTHLVLEAFSYSFIMF--STCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSXAKCLK 129
S+ S HL L Y ++++ + C L +SFL P+H + R GF + A +
Sbjct: 185 SVISFHLTLSRKPYYYLLYILTPCSVLCLLTLTSFLIPSH--SGERIGFITTLLLAMTVY 242
Query: 128 FLL 120
LL
Sbjct: 243 LLL 245
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = -3
Query: 171 TRVYHANVXSQVFEV-------PFENSAGPFNCHQTRFHXDRNP 61
TR YH NV VF V F S G + HQ + DR P
Sbjct: 108 TRSYHKNVVKLVFGVNDYWYRYEFAKSRGQIHWHQLSWREDRQP 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,755
Number of Sequences: 59808
Number of extensions: 310190
Number of successful extensions: 611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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