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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0331
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         95   5e-20
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_34402| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)                    29   2.6  
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   28   4.5  
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   5.9  
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)         27   7.9  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           27   7.9  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 43/80 (53%), Positives = 58/80 (72%)
 Frame = +1

Query: 19  MKQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMVNPRLLKVEKWFG 198
           MK I+A++   IP  V V VKSR+VTV GPRG LKRNF+HL  ++  V    ++V+ WF 
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616

Query: 199 SKKELAAVRTVCSHVENMIK 258
           S+KELA V+T+ +H+ENMIK
Sbjct: 617 SRKELACVKTIITHIENMIK 636



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 30/49 (61%), Positives = 38/49 (77%)
 Frame = +3

Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAP 401
           KGV  G++YKMRAVYAHFPIN    E  +++ +RNFLGEKY+ RV+M P
Sbjct: 636 KGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +2

Query: 485 ALIQESTTVKNKDIRKFXDGLYV 553
           ALIQ+ST VKNKDIRKF DG+YV
Sbjct: 2   ALIQQSTKVKNKDIRKFLDGVYV 24


>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 338 ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFS 243
           +T+  D   G VS H+THLV  A S +++ F+
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAYLSFA 204


>SB_34402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 353 YXNN*ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFSTCEQTVLTAASSFLDPNHFSTFR 174
           Y N+   ++ D   GE    S    +E FSY  ++    E T      SF  PN F  FR
Sbjct: 47  YGNSYFNIATDFGTGEFLAFSQDWKMETFSYGKVL----ENTFAMCLKSFGSPNTFLNFR 102


>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
          Length = 197

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
 Frame = -3

Query: 171 TRVYHANVXSQVFEVP-------FENSAGPFNCHQTRFHXDRNP 61
           TR YH NV   VF V        F  S G  N HQ  +  DR P
Sbjct: 57  TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 457 VPSMISSSFCXGELTTVTPGAIFTLXMYFSPKKLRIXIIE 338
           +P  I S    G+L  +T G I T      PKKL   +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257


>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 180 LQETRVYHANVXSQVFEVPFENSAGPFNCHQ 88
           L  TR+ +  V S   EV  E S  P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 76   VKSRLVTVKGPRGVLKRNFKHL 141
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
          Length = 428

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 302 SIHSTHLVLEAFSYSFIMF--STCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSXAKCLK 129
           S+ S HL L    Y ++++  + C    L   +SFL P+H  +  R GF   +  A  + 
Sbjct: 185 SVISFHLTLSRKPYYYLLYILTPCSVLCLLTLTSFLIPSH--SGERIGFITTLLLAMTVY 242

Query: 128 FLL 120
            LL
Sbjct: 243 LLL 245


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
 Frame = -3

Query: 171 TRVYHANVXSQVFEV-------PFENSAGPFNCHQTRFHXDRNP 61
           TR YH NV   VF V        F  S G  + HQ  +  DR P
Sbjct: 108 TRSYHKNVVKLVFGVNDYWYRYEFAKSRGQIHWHQLSWREDRQP 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,755
Number of Sequences: 59808
Number of extensions: 310190
Number of successful extensions: 611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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