Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0331
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    93   2e-19
AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a...    28   4.0  
AC025726-2|AAO21421.1|  174|Caenorhabditis elegans Male abnormal...    28   4.0  
AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal...    28   4.0  
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U55365-4|AAA98571.1|  492|Caenorhabditis elegans Cytochrome p450...    27   9.1  
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    27   9.1  
AC006720-7|AAF60444.1|  511|Caenorhabditis elegans Cytochrome p4...    27   9.1  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 40/80 (50%), Positives = 56/80 (70%)
 Frame = +1

Query: 19  MKQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMVNPRLLKVEKWFG 198
           MK I +N     P  VT  VK+R+V V GPRG ++++F+HL  ++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 199 SKKELAAVRTVCSHVENMIK 258
            +KELAA+RTVCSH++NMIK
Sbjct: 61  VRKELAAIRTVCSHIKNMIK 80



 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 39/67 (58%), Positives = 48/67 (71%)
 Frame = +3

Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAPGVTVVNSPKQK 434
           KGVT GF+YKMR+VYAHFPIN    +GN  + IRNFLGEK + RV +  GV    S  QK
Sbjct: 80  KGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQK 139

Query: 435 DELIIEG 455
           DE+++EG
Sbjct: 140 DEIVVEG 146



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +2

Query: 455 HSLEDVSSSAALIQESTTVKNKDIRKFXDGLYV 553
           + ++ VS +AA IQ+ST VK KDIRKF DG+YV
Sbjct: 147 NDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYV 179


>AF216968-1|AAF60253.2|  658|Caenorhabditis elegans semaphorin-2a
           protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
           FS  FI +++CE   + A ++F DPN
Sbjct: 7   FSVIFIAYNSCEAANIQADNTFADPN 32


>AC025726-2|AAO21421.1|  174|Caenorhabditis elegans Male abnormal
           protein 20, isoform b protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
           FS  FI +++CE   + A ++F DPN
Sbjct: 7   FSVIFIAYNSCEAANIQADNTFADPN 32


>AC025726-1|AAK73921.1|  658|Caenorhabditis elegans Male abnormal
           protein 20, isoform a protein.
          Length = 658

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 269 FSYSFIMFSTCEQTVLTAASSFLDPN 192
           FS  FI +++CE   + A ++F DPN
Sbjct: 7   FSVIFIAYNSCEAANIQADNTFADPN 32


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 254 IMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSXAKCL 132
           +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 280 LLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>U55365-4|AAA98571.1|  492|Caenorhabditis elegans Cytochrome p450
           family protein 33A1 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 502 RFLDESSRARDIFQRVPSMISSSFCXGE 419
           R+LDES   + I + VP  I    C GE
Sbjct: 412 RYLDESGNLKKIEELVPFSIGKRVCLGE 439


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 296 HSTHLVLEAFSYSFIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSXAKCLKF 126
           ++TH+ LE  S  F  FS CE   + A+  S  D         +G ++R    +C  F
Sbjct: 182 NATHIKLEGVSVPFDNFSHCEDVRIHASKVSANDIQTLVEIAYKGSSLRFFYVRCDSF 239


>AC006720-7|AAF60444.1|  511|Caenorhabditis elegans Cytochrome p450
           family protein 31A3 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 517 ILDCSRFLDESSRARDIFQRVPSMISSSFCXGE 419
           + D  RFL E+S AR  F  +P    S  C G+
Sbjct: 423 VFDPDRFLPENSIARKSFAFIPFSAGSRNCIGQ 455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,116,703
Number of Sequences: 27780
Number of extensions: 236848
Number of successful extensions: 566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)