Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0331
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...    84   5e-17
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...    84   5e-17
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...    84   7e-17
At3g15605.1 68416.m01978 hypothetical protein                          28   3.7  
At2g34030.1 68415.m04166 calcium-binding EF hand family protein ...    27   8.5  
At1g03320.1 68414.m00311 hypothetical protein                          27   8.5  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 38/66 (57%), Positives = 48/66 (72%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAPGVTVVNSPKQKD 437
           GVT+GF+YKMR VYAHFPIN         I IRNFLGEK + +V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 438 ELIIEG 455
           E++++G
Sbjct: 146 EIVLDG 151



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 34/84 (40%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
 Frame = +1

Query: 19  MKQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMV-----NPRLLKV 183
           MK I++++   IP  VT+ V ++++ V+GPRG L R+FKHL  D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
           + WFG++K  A++RT  SHV+N+I
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLI 84



 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +2

Query: 455 HSLEDVSSSAALIQESTTVKNKDIRKFXDGLYV 553
           + +E VS S ALI +   VK KDIRKF DG+YV
Sbjct: 152 NDIELVSRSCALINQKCHVKKKDIRKFLDGIYV 184


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 38/66 (57%), Positives = 48/66 (72%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAPGVTVVNSPKQKD 437
           GVT+GF+YKMR VYAHFPIN         I IRNFLGEK + +V+M  GVT+V S K KD
Sbjct: 86  GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145

Query: 438 ELIIEG 455
           E++++G
Sbjct: 146 EIVLDG 151



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 34/84 (40%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
 Frame = +1

Query: 19  MKQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMV-----NPRLLKV 183
           MK I++++   IP  VT+ V ++++ V+GPRG L R+FKHL  D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
           + WFG++K  A++RT  SHV+N+I
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLI 84



 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +2

Query: 455 HSLEDVSSSAALIQESTTVKNKDIRKFXDGLYV 553
           + +E VS S ALI +   VK KDIRKF DG+YV
Sbjct: 152 NDIELVSRSCALINQKCHVKKKDIRKFLDGIYV 184


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 39/66 (59%), Positives = 47/66 (71%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIXIRNFLGEKYIXRVKMAPGVTVVNSPKQKD 437
           GVT+GF Y+MR VYAHFPIN      N  I IRNFLGEK + +V+M  GV +V S K KD
Sbjct: 86  GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKD 145

Query: 438 ELIIEG 455
           E+I+EG
Sbjct: 146 EIILEG 151



 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 5/84 (5%)
 Frame = +1

Query: 19  MKQIVANQKXXIPXXVTVXVKSRLVTVKGPRGVLKRNFKHLAXDIRMV-----NPRLLKV 183
           MK I++++   IP  V + V ++++ V+GPRG L R+FKHL  D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
           + WFGS+K  A++RT  SHV+N+I
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLI 84



 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +2

Query: 455 HSLEDVSSSAALIQESTTVKNKDIRKFXDGLYV 553
           + +E VS S ALI +   VK KDIRKF DG+YV
Sbjct: 152 NDIELVSRSCALINQKCHVKKKDIRKFLDGIYV 184


>At3g15605.1 68416.m01978 hypothetical protein
          Length = 543

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 102 FNCHQTRFHXDRNPVWDXXFLIC 34
           F  HQ RF  +  P WD  FL C
Sbjct: 109 FTRHQQRFLGEYEPQWDELFLAC 131


>At2g34030.1 68415.m04166 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 566

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 281 VLEAFSYSFIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSXAKCLKFLLRTPR 108
           +L  F    +M ST        ASSF+D N   T     F++ +    C+ F +  PR
Sbjct: 120 LLTMFPRIALMLSTGLSLSRDVASSFIDDNVGLTVGHTVFSLTIQWGACVVFSITGPR 177


>At1g03320.1 68414.m00311 hypothetical protein
          Length = 220

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -3

Query: 225 PXGGKLLFGSEPFLNLQETRVYHANVXSQ----VFEVPFENSAGPFNCHQTRFHXDRNPV 58
           P GG +    +P+ ++   R++     SQ        P+  +AGPF   QTR + D NP+
Sbjct: 150 PCGGPI----DPYQSMPRPRMFDGVHISQYPPMAAAYPYMAAAGPFPYWQTRPYMDANPM 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,416,740
Number of Sequences: 28952
Number of extensions: 215817
Number of successful extensions: 434
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)