Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0330
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   3.2  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    26   4.2  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   5.6  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   5.6  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   7.4  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.4  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.8  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 403 RLYNNLEPNSPLRYHVYYHVIELA 474
           RLY+ +   + +R++V Y+V+E+A
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIA 269


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -1

Query: 509 PVKTPLTNPTRAASSMT**YTWYLRGELGSKLL*SLHNDCKATIPSLGPRSLSEPL 342
           P  +PL  P+R  S  +  Y W   G+L   +    H   +   P    +S S PL
Sbjct: 234 PYTSPLRTPSRTLSRSSSHYLWVRHGKLTRSVSLLQHKTPRRIRPKSLSKSNSTPL 289


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 55  QFKKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDD 201
           +  +GIK +G ++  +I+ +DQA     YF S   E  E  +    E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 199 DLHKIVGVCDACFKEPSESTSKPF*TVLS 285
           +L   + +C +CF  P ++   PF T +S
Sbjct: 164 ELQDAIRICFSCFTLPQQTMESPFATSMS 192


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +2

Query: 77  CKGQLCLWTYPWKIRHSN*EDILRALAPRFQKKNHLRALRMICIRSLGFVMLVSKSRVNR 256
           C    CL+   +     N ED L  LAP F+  NH    +   I + G + + S  R+++
Sbjct: 160 CVNTRCLY---YDTGSKNTEDHL-TLAPIFEYFNHSPEAQTALINTRGTITIKSTRRIDK 215

Query: 257 HRSHSEQYCLYYG 295
                EQ  L YG
Sbjct: 216 ----GEQIFLCYG 224


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 87  SCVYGHIPGRSGTRTEKIF*EPWRRDFRR 173
           S VYG +PG    + E++  E W   FR+
Sbjct: 636 SDVYGKVPGALNIKPEQMTPEVWDHVFRQ 664


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 383 TIPSLGPRSLSEPLTKC 333
           +IP++  RSL++P+T C
Sbjct: 679 SIPAISKRSLTKPVTSC 695


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 140 ILRALAPRFQKKNHLRALRMICIR 211
           ILR LAP F +KN L+ L  +  R
Sbjct: 97  ILRLLAPFFTEKNALKVLEWLIRR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,671
Number of Sequences: 5004
Number of extensions: 42560
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)