Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0330
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663...    29   1.9  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    28   5.7  
11_03_0142 + 10675764-10675991,10676533-10676943                       27   7.5  
06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812     27   7.5  
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127...    27   7.5  

>12_02_0871 +
           23865343-23866016,23866122-23866170,23866276-23866356,
           23866599-23866718,23866957-23867055,23867135-23867194,
           23867316-23867410,23867483-23867508,23869212-23869285,
           23870194-23870259,23871027-23871099,23871585-23871622,
           23873758-23873871,23876079-23876195,23876288-23876368,
           23876468-23876536,23876631-23876669,23876809-23876973,
           23877380-23877484,23877569-23877637,23877754-23877816,
           23877903-23878021,23878124-23878348,23878409-23878610
          Length = 940

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 28  CL*IINKRI-QFKKGI-KMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIED 198
           C  I++ RI + + GI K+QG  + +D+SL+   L      K  G E  EE   K +ED
Sbjct: 431 CGEIVDLRIMKDQNGISKLQGKRLAVDLSLDQDTLFFGNLCKDWGIEEFEELIRKALED 489


>07_03_1479 -
           26832976-26833095,26833737-26833943,26834104-26834252,
           26834330-26834732,26834840-26835118,26835285-26835716,
           26836362-26836838,26837171-26837212,26837285-26837545,
           26837637-26838938,26839146-26839575,26839643-26840046,
           26840360-26840716,26840842-26841102,26841494-26842141,
           26842231-26842452,26842547-26842768,26842860-26843009,
           26843739-26844111,26844467-26844689,26845167-26845425,
           26845585-26845920,26846013-26846999,26848395-26849624,
           26849706-26849768,26849858-26849910,26849998-26850079,
           26850520-26850588,26851070-26851129,26851205-26851267,
           26851993-26852101,26852742-26852827,26853120-26853847,
           26854613-26854676
          Length = 3716

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 130 LRRYFKSLGAEISEEKSPKGIEDDLHKIVG-VCDACFKEPSESTSKPF 270
           LR YF++  A +S   +P+G E+  HK+   V +   + P     +PF
Sbjct: 49  LRCYFRAFSAILSNFTAPQGTENAEHKLRNVVIEILNRLPHSEVLRPF 96


>11_03_0142 + 10675764-10675991,10676533-10676943
          Length = 212

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 98  INTAGPCILIPFLNCILLFIIYKH*SECKN 9
           + + GP + +P +NC LL ++ K    C N
Sbjct: 147 VGSLGPMVAVPCVNCHLLVMLCKSSPACPN 176


>06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812
          Length = 419

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 187 GIEDDLHKIVGVCDACFKEPSE--STSKPF*TVLSLL 291
           G E++  K+VGV  AC K  S      KPF  V +LL
Sbjct: 101 GEEEEKKKVVGVIKACVKTVSRGGKQEKPFVKVANLL 137


>03_05_0559 -
           25610474-25610951,25611149-25611890,25612355-25612744,
           25613041-25613099,25613186-25613326,25613449-25613545,
           25614999-25615185
          Length = 697

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 160 EISEEKSPKGIEDDLHKIVGVCDACFKEPSESTSKP 267
           E+ +E +  GI   + KIV   DA  K+ ++STSKP
Sbjct: 402 EVKDEGNSAGIL--VEKIVPTADARLKDVTDSTSKP 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,599
Number of Sequences: 37544
Number of extensions: 260232
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)