Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0330
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    30   1.2  
At2g35550.2 68415.m04355 expressed protein                             27   6.3  
At2g35550.1 68415.m04354 expressed protein                             27   6.3  
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t...    27   8.3  
At5g51050.1 68418.m06328 mitochondrial substrate carrier family ...    27   8.3  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    27   8.3  
At4g00120.1 68417.m00012 basic helix-loop-helix (bHLH) family pr...    27   8.3  
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa...    27   8.3  

>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 77  CKGQLCLW--TYPWKIRHSN*EDIL 145
           C   LCLW  + P KIRHSN E IL
Sbjct: 519 CDFNLCLWCASLPKKIRHSNDEHIL 543


>At2g35550.2 68415.m04355 expressed protein
          Length = 226

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 427 WVLSCCKVSITIAKLPFQV*GPGA 356
           W  SCC +SI+   LP     PGA
Sbjct: 155 WQSSCCTISISTYPLPMSTTRPGA 178


>At2g35550.1 68415.m04354 expressed protein
          Length = 271

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 427 WVLSCCKVSITIAKLPFQV*GPGA 356
           W  SCC +SI+   LP     PGA
Sbjct: 200 WQSSCCTISISTYPLPMSTTRPGA 223


>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 917

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 509 PVKTPLTNPTRAASSMT 459
           P+++PLT+P R+ASS T
Sbjct: 63  PMRSPLTSPNRSASSST 79


>At5g51050.1 68418.m06328 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427; contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 487

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 109 LEDQALELRRYFKSLGAEISEEKSPKGIEDDLHK 210
           ++D+ LEL R F+++  E +   SP+G+ D L K
Sbjct: 101 MDDKELELYRIFQAIDVEHNGCISPEGLWDSLVK 134


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 346 GSLRLLGPKLGMVALQSLWRLYNNLEPN 429
           G ++ L  +LG+ ALQ++ R+   L+PN
Sbjct: 525 GKMKYLEKELGIEALQTMKRIKKTLDPN 552


>At4g00120.1 68417.m00012 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 198

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 190 IEDDLHKIVGVCDACFKEPSESTSKP 267
           +E+ ++K  GVCD+C    S S   P
Sbjct: 1   MENGMYKKKGVCDSCVSSKSRSNHSP 26


>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature
          Length = 408

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 384 SFAIVMETLQQLRTQLTSKIPCILS 458
           +FA++M+ +Q +R +LTS  P +++
Sbjct: 119 NFALLMDNVQHIRQRLTSSFPVLVT 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,466,834
Number of Sequences: 28952
Number of extensions: 220458
Number of successful extensions: 616
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)