Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0328
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   4.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.4  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   8.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.4  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 133 HPAPSHSSLNTPTL 92
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 256 NQCRIMGYRTCCCPN 300
           +Q R  G  TC CPN
Sbjct: 281 SQRRYTGRATCDCPN 295


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 147 PVRIQGAHTSGPGQ*CSR 200
           PVRI G H  G    C++
Sbjct: 196 PVRIMGVHRPGFDNDCNK 213


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 120 DGAGCSQAPPVRIQGAHTSGP 182
           + +  S  PP+ I GA  +GP
Sbjct: 300 EDSSISGVPPLSIDGALEAGP 320


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 323 YHHHGHAEFGQQHV 282
           +HH GH    Q HV
Sbjct: 323 HHHAGHHIHAQHHV 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,502
Number of Sequences: 336
Number of extensions: 2428
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)