Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0328
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   113   9e-26
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    30   1.1  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z81540-10|CAB04398.1|  354|Caenorhabditis elegans Hypothetical p...    27   7.8  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  113 bits (271), Expect = 9e-26
 Identities = 53/85 (62%), Positives = 56/85 (65%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 434 XXXXXXXXXXXXXXXXXQARGHIIE 508
                            QARGH+I+
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVID 144



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVRRR 246
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V  +
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTK 56


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 187 NDVHVSMSKNSRQP-YCVRRRLVTNQC--RIMGYRTCCCPNSAC 309
           N V  + S  +  P Y  R    TN+C  +  G+ TCCC + AC
Sbjct: 844 NGVATTASLYTCDPSYICRMMNSTNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 187 NDVHVSMSKNSRQP-YCVRRRLVTNQC--RIMGYRTCCCPNSAC 309
           N V  + S  +  P Y  R    TN+C  +  G+ TCCC + AC
Sbjct: 844 NGVATTASLYTCDPSYICRMMNSTNRCHQQEQGFETCCCDSDAC 887


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 130 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 29
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 368 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 285
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z81540-10|CAB04398.1|  354|Caenorhabditis elegans Hypothetical
           protein F46B3.9 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 163 APIRPDLVNDVHVSMSKNSRQP--YCVRRRLVTNQCRIMGYRTCCCPNSACPWWWYP*VR 336
           A  R   V+ V  S SK + +P  YCV  + V    +++G  T  C    CP  ++  V+
Sbjct: 14  ASARSAPVDYVVDSCSKLACRPGFYCVSGKCVEGNAQLVGRHTYLCNLRKCPLGYHCSVK 73

Query: 337 SG 342
            G
Sbjct: 74  DG 75


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 505 NNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 398
           N VS+ + + ++AS+S G   G S  +E+D   P P
Sbjct: 625 NGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 369 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 271
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 369 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 271
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,189,543
Number of Sequences: 27780
Number of extensions: 238666
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)