Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0328
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 113 9e-26
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 113 9e-26
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 33 0.084
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.45
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.4
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 1.8
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 1.8
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 1.8
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 29 1.8
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 29 1.8
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 3.1
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 7.3
At3g05650.1 68416.m00629 disease resistance family protein conta... 27 7.3
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 7.3
At1g76010.1 68414.m08825 expressed protein 27 7.3
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 27 7.3
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 27 9.6
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins... 27 9.6
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 27 9.6
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 27 9.6
At2g37010.1 68415.m04539 ABC transporter family protein contains... 27 9.6
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 27 9.6
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 113 bits (271), Expect = 9e-26
Identities = 53/85 (62%), Positives = 55/85 (64%)
Frame = +2
Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 67 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 126
Query: 434 XXXXXXXXXXXXXXXXXQARGHIIE 508
ARGH IE
Sbjct: 127 RHAIVSAIAATAVPALVMARGHKIE 151
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +1
Query: 76 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVRRR 246
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY V ++
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 113 bits (271), Expect = 9e-26
Identities = 53/85 (62%), Positives = 55/85 (64%)
Frame = +2
Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 66 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 125
Query: 434 XXXXXXXXXXXXXXXXXQARGHIIE 508
ARGH IE
Sbjct: 126 RHAIVSAIAATAVPALVMARGHKIE 150
Score = 57.6 bits (133), Expect = 4e-09
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +1
Query: 67 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVR 240
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY V
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 241 RR 246
++
Sbjct: 61 KK 62
>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
(PTPA) family protein similar to Protein phosphatase 2A,
regulatory subunit B' (PP2A, subunit B', PR53 isoform)
(Phosphotyrosyl phosphatase activator) (PTPA)
(Swiss-Prot:Q28717) [Oryctolagus cuniculus]
Length = 392
Score = 33.5 bits (73), Expect = 0.084
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -2
Query: 351 PKAP*PDLWVPPPRTRGIRATARPVPHDSALVCDQPPSHAVGLPRV 214
P A P++ PPP R IRA A +PH+S + P HA +P V
Sbjct: 46 PLASFPEM-SPPPNYRPIRAPAINLPHNSQAIILSPVPHAEQVPVV 90
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.1 bits (67), Expect = 0.45
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 368 HHDTCYRRHPDRTYGYHHHGHAEF 297
HH Y H YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 91 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 237
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 364 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 462
WW +V LA+ APS P + L SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 364 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 462
WW +V LA+ APS P + L SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/86 (24%), Positives = 32/86 (37%)
Frame = -2
Query: 393 GFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALVCDQPPSHAVGLPRV 214
GFV + P H +P L PPP++ + + P P S+ +P VG
Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEPIPPTVGTSST 233
Query: 213 LGHRNVNIIDQVRTYGRLEYEREGLG 136
R + G E E + +G
Sbjct: 234 KRRRTTP--GETTAGGEREVEEDAVG 257
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 212 RTRGSPTA*EGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 373
RT EG S+ + G GR R +GGG H+ G+G +GGR
Sbjct: 6 RTDAPSEGGEGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 212 RTRGSPTA*EGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 373
RT EG S+ + G GR R +GGG H+ G+G +GGR
Sbjct: 6 RTDAPSEGGEGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 142 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 237
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 142 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 237
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 66 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 203
N +I +PT S+ G S V + GAHT G + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207
>At3g05650.1 68416.m00629 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-4A protein
[Lycopersicon esculentum] gi|3097197|emb|CAA73187
Length = 868
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 424 PTAESGLGSSRCCYW 468
PT ES +S CCYW
Sbjct: 66 PTTESWANNSDCCYW 80
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 275 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 370
G GR R +GGG + G G+ G+ CR G
Sbjct: 88 GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 227 PTA*EGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 367
P+ GG+ + G GR R R RGGG R G G F N G
Sbjct: 301 PSQGRGGYD--GPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 130 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 32
PAPS ++ N + +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 145 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 32
G W+H SH+ ++ L VG+ + Y+S + P +Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 159
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 242 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 352
G S+ S G + IP + GGGTHRSG + G
Sbjct: 103 GSSSRGGGGSSSRGGGLRPIP-IYGGGTHRSGHHSSG 138
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Frame = -2
Query: 366 PRHMLPKAP*PDLWVPPPRTRGIRATAR-----PVPHDSALVCDQPPSH 235
P P P P P P T T P PH C PPSH
Sbjct: 65 PSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSH 113
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Frame = -2
Query: 366 PRHMLPKAP*PDLWVPPPRTRGIRATAR-----PVPHDSALVCDQPPSH 235
P P P P P P T T P PH C PPSH
Sbjct: 65 PSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSH 113
>At2g37010.1 68415.m04539 ABC transporter family protein contains
ABC transporter domain, Pfam:PF00005
Length = 1063
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Frame = -2
Query: 375 IRPPRHMLP-----KAP*PDLWVPPPRTRGIRATARPVPHDSALVCDQPPSHAVG 226
+ PP H + P D+ + R + PVPHD CD PS + G
Sbjct: 709 VNPPDHYIDILEGIVKPDGDITIEQLPVRWMLHNGYPVPHDMLKFCDGLPSSSTG 763
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 396 GGAGTVASTSDSGERPWQQ 452
GGAG +DS +PWQQ
Sbjct: 117 GGAGRGRGQADSSAKPWQQ 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,795,894
Number of Sequences: 28952
Number of extensions: 233434
Number of successful extensions: 899
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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