Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0327
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    83   3e-17
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   3.1  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.1  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   5.4  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 82.6 bits (195), Expect = 3e-17
 Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
 Frame = +3

Query: 249 FXICIYLHIGRGIYYESFNLK--YVXXXXXXXXXXXXXXXXXXYVLP*GQISFWGATVIT 422
           F I +YLHIGRG+YY S+                         Y LP  Q+SFWGATVIT
Sbjct: 89  FFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVIT 148

Query: 423 NLLSAIPYLGTILVN*I*GGFAGDNATLTDFNTFHFLL 536
           NLLSA+P++G  LV+ + GGF+  N TL  F + H+L+
Sbjct: 149 NLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLM 186



 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 25/51 (49%), Positives = 35/51 (68%)
 Frame = +1

Query: 94  ALCLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGAS 246
           A  L+IQI+ G+ L  +Y  N+++AF  V  I R+VNYG ++R  HANGAS
Sbjct: 37  ACVLVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGAS 87


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 323 NWNYNFIYTNSNCXHRXCLTLRSNIFLGGN 412
           NWN      +SN  +R C TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 180 KLYLPKCKLWLNNSNITC*WSFIFXICIYLHIGRGIYYESFNLK 311
           + Y  KCKLW ++ N +   S+    C    IGRG+  + F+ K
Sbjct: 206 RYYCNKCKLWDDDPNKS---SYHCDDCGICRIGRGLGDDYFHCK 246


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 323 NWNYNFIYTNSNCXHRXCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 478
           N +Y F + N        L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,274
Number of Sequences: 5004
Number of extensions: 32176
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)